Gorai.005G116500 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.005G116500 T008548_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF021
M06593_2.00
Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD

HGDCGGYGRHGRHGRHGRND
Dap-seq
OMalley et al.(2016)
AT1G71450_col_a
0.749 0.860
ERF021
M06594_2.00
Arabidopsis thaliana
NHNNCRCCGHCDH

DHGDCGGYGNNDN
Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a
0.749 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.005G116500.1 AP2 15 66

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.797
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.789
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.789
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.789
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.788
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.787
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.787
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.787
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.782
Pm004269 Prunus mume Pm004269 I 0.782
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.780
Cla012665 Citrullus lanatus Cla012665 I 0.780
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.780
28118.m000034 Ricinus communis 28118.m000034 I 0.779
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.778
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.774
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.774
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.773
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.773
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.773
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.773
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.772
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.770
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.769
TCM_036269 Theobroma cacao TCM_036269 I 0.768
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.766
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.765
MDP0000283350 Malus domestica MDP0000283350 I 0.763
TCM_036270 Theobroma cacao TCM_036270 I 0.757
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.756
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.752
ERF021 Arabidopsis thaliana AT1G71450 D 0.749
Bo2g072910 Brassica oleracea Bo2g072910 I 0.749
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.749
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.749
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.749
Bo6g113020 Brassica oleracea Bo6g113020 I 0.748
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.746
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.746
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.745
Bo8g027240 Brassica oleracea Bo8g027240 I 0.743
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.741
Bra016136 Brassica rapa Bra016136 I 0.740
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.739
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.739
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.739
ERF022 Arabidopsis thaliana AT1G33760 I 0.738
Bra010210 Brassica rapa Bra010210 I 0.738
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.737
Bra007975 Brassica rapa Bra007975 I 0.734
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.732
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.731
Bra028009 Brassica rapa Bra028009 I 0.730
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.730
27805.m000021 Ricinus communis 27805.m000021 I 0.729
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.728
Pm004272 Prunus mume Pm004272 I 0.728
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.727
Cla012661 Citrullus lanatus Cla012661 I 0.726
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.726
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.726
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.724
Bo6g046850 Brassica oleracea Bo6g046850 I 0.724
MDP0000151428 Malus domestica MDP0000151428 I 0.723
MDP0000122739 Malus domestica MDP0000122739 I 0.723
MDP0000122740 Malus domestica MDP0000122740 I 0.723
Bo5g086680 Brassica oleracea Bo5g086680 I 0.723
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.722
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I 0.721
LPERR11G07100 Leersia perrieri LPERR11G07100 I 0.719
Pavir.J22217 Panicum virgatum Pavir.J22217 I 0.718
Pavir.J26137 Panicum virgatum Pavir.J26137 I 0.718
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.718
OMERI11G06840 Oryza meridionalis OMERI11G06840 I 0.718
ONIVA11G08160 Oryza nivara ONIVA11G08160 I 0.718
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I 0.718
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I 0.718
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I 0.718
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.718
BGIOSGA034227 Oryza indica BGIOSGA034227 I 0.718
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.718
F775_17299 Aegilops tauschii F775_17299 I 0.718
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.718
OS11G0242300 Oryza sativa OS11G0242300 I 0.718
OPUNC11G07750 Oryza punctata OPUNC11G07750 I 0.718
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.718
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.718
Sb05g007135 Sorghum bicolor Sb05g007135 I 0.718
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.718
OB11G16300 Oryza brachyantha OB11G16300 I 0.717
Si026882m.g Setaria italica Si026882m.g I 0.716
Bra003924 Brassica rapa Bra003924 I 0.714
Bo6g094210 Brassica oleracea Bo6g094210 I 0.714
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.713
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.711
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.710
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.710
GSMUA_Achr11G12650_001 Musa acuminata GSMUA_Achr11G12650_001 N 0.709
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.709
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.709
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.708
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.708
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.708
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.708
Ca_15064 Cicer arietinum Ca_15064 I 0.707
GSMUA_Achr8G16250_001 Musa acuminata GSMUA_Achr8G16250_001 I 0.706
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I 0.705
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.704
Lus10041052.g Linum usitatissimum Lus10041052.g N 0.701
MTR_5g008550 Medicago truncatula MTR_5g008550 I 0.700
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.695
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.691
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.688
Traes_2BL_9CD6E043A Triticum aestivum Traes_2BL_9CD6E043A I 0.687
TRIUR3_32168 Triticum urartu TRIUR3_32168 I 0.685
SapurV1A.0601s0170 Salix purpurea SapurV1A.0601s0170 N 0.682
Lus10003513.g Linum usitatissimum Lus10003513.g N 0.678