Gorai.006G046200 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.006G046200 T008558_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.781 0.900
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.781 0.900
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.781 0.900
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.781 0.900
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.759 0.880
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.759 0.880
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.759 0.880
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.755 0.900
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.755 0.900
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.720 0.800
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.720 0.800
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.719 0.920
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.719 0.920
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.680 0.740
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.680 0.740
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.680 0.740
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.680 0.740
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.680 0.740
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.680 0.740
Q8S2T5_BRANA
M09746_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF5_01 		0.678 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G046200.1 AP2 60 111

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.794
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.794
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.794
30147.m014313 Ricinus communis 30147.m014313 I 0.794
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.794
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.794
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.791
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.791
PK23332.1 Cannabis sativa PK23332.1 I 0.788
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.788
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.788
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.788
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.787
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.787
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.787
Cla006315 Citrullus lanatus Cla006315 I 0.786
DREB1A Arabidopsis thaliana AT4G25480 D 0.781
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.781
mgf026642m Mimulus guttatus mgf026642m I 0.781
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.775
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.766
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.765
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.765
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.764
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.761
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.759
DREB1C Arabidopsis thaliana AT4G25470 D 0.759
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.758
Cla002362 Citrullus lanatus Cla002362 I 0.756
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.755
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.755
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.755
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.755
Bo9g104770 Brassica oleracea Bo9g104770 I 0.755
DREB1D Arabidopsis thaliana AT5G51990 D 0.755
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.755
Bra028290 Brassica rapa Bra028290 I 0.755
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.752
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.751
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.745
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.745
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.744
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.744
MDP0000154764 Malus domestica MDP0000154764 I 0.739
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.739
mgf017136m Mimulus guttatus mgf017136m I 0.738
MDP0000198054 Malus domestica MDP0000198054 I 0.737
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.736
Cla011674 Citrullus lanatus Cla011674 I 0.736
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.735
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.735
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.735
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.735
Pm023775 Prunus mume Pm023775 I 0.735
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.734
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.734
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.734
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.734
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.734
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.734
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.732
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.732
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.729
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.727
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.727
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.725
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.725
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.725
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.723
mgf019061m Mimulus guttatus mgf019061m I 0.722
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.722
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.721
Pm023769 Prunus mume Pm023769 I 0.721
OBART02G27760 Oryza barthii OBART02G27760 I 0.720
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.720
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.720
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.720
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.720
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.720
DREB1G Oryza sativa OS02G0677300 D 0.720
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.720
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.720
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.720
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.720
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.720
DREB1G Oryza indica BGIOSGA008804 I 0.720
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.719
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.719
Bra019162 Brassica rapa Bra019162 I 0.719
TCM_016175 Theobroma cacao TCM_016175 I 0.719
Bo7g110320 Brassica oleracea Bo7g110320 I 0.719
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.718
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.717
Bra022770 Brassica rapa Bra022770 I 0.716
Pm023772 Prunus mume Pm023772 I 0.713
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.713
30190.m011120 Ricinus communis 30190.m011120 I 0.713
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.712
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.712
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.711
Si018262m.g Setaria italica Si018262m.g I 0.710
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.710
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.710
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.708
60638.m00016 Ricinus communis 60638.m00016 I 0.708
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.707
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.707
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.707
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.706
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.706
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.704
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.704
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.704
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.703
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.702
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.701
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.701
30190.m011119 Ricinus communis 30190.m011119 I 0.701
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.699
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.698
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.698
mgf026339m Mimulus guttatus mgf026339m I 0.696
Pm019386 Prunus mume Pm019386 I 0.695
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.693
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.693
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.690
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.689
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.688
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.688
Bo01335s010 Brassica oleracea Bo01335s010 I 0.687
Bra016763 Brassica rapa Bra016763 I 0.687
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.687
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.686
Ca_04504 Cicer arietinum Ca_04504 I 0.685
Bra026963 Brassica rapa Bra026963 I 0.684
Bo8g108050 Brassica oleracea Bo8g108050 I 0.684
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.683
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.682
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.681
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.681
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.681
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.681
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.681
DREB1F Arabidopsis thaliana AT1G12610 D 0.680
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.680
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.678
Q8S2T5_BRANA Brassica napus Q8S2T5_BRANA D 0.678
Bo3g024240 Brassica oleracea Bo3g024240 I 0.678
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.677
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.677
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.677
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.677
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.677
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.677