Gorai.007G109400 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.007G109400 T008588_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF023
M06560_2.00 		Arabidopsis thaliana
DYCACCGACANHDNN
NNHDNTGTCGGTGRH		 Dap-seq
OMalley et al.(2016)
AT1G01250_col_a 		0.792 0.880
ERF023
M06561_2.00 		Arabidopsis thaliana
HHNHHDHCACCGACA
TGTCGGTGDHDDNDD		 Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a 		0.792 0.880
estExt_fgenesh1_pg.C_4800009
M01639_2.00 		Physcomitrella patens
MACCGACM
KGTCGGTK		 PBM
Weirauch et al.(2014)
pTH8488 		0.677 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G109400.1 AP2 35 86

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.008G126000 Gossypium raimondii Gorai.008G126000 I 0.805
TCM_005130 Theobroma cacao TCM_005130 I 0.805
mgf020568m Mimulus guttatus mgf020568m I 0.801
GLYMA16G02680 Glycine max GLYMA16G02680 I 0.800
GLYMA07G06080 Glycine max GLYMA07G06080 I 0.800
MTR_8g027465 Medicago truncatula MTR_8g027465 I 0.796
Pm018354 Prunus mume Pm018354 I 0.796
Ca_17638 Cicer arietinum Ca_17638 I 0.796
PRUPE_ppa026139mg Prunus persica PRUPE_ppa026139mg I 0.796
SapurV1A.0003s1030 Salix purpurea SapurV1A.0003s1030 I 0.795
gene19141-v1.0-hybrid Fragaria vesca gene19141-v1.0-hybrid I 0.795
29742.m001400 Ricinus communis 29742.m001400 I 0.795
POPTR_0014s09540 Populus trichocarpa POPTR_0014s09540 I 0.795
PK15554.1 Cannabis sativa PK15554.1 I 0.795
chr1.LjT43L07.200.nd Lotus japonicus chr1.LjT43L07.200.nd I 0.795
ERF023 Arabidopsis thaliana AT1G01250 D 0.792
Cagra.1968s0069 Capsella grandiflora Cagra.1968s0069 I 0.792
Carubv10010347m.g Capsella rubella Carubv10010347m.g I 0.792
fgenesh2_kg.1__103__AT1G01250.1 Arabidopsis lyrata fgenesh2_kg.1__103__AT1G01250.1 I 0.792
MTR_7g117690 Medicago truncatula MTR_7g117690 I 0.791
Bra032630 Brassica rapa Bra032630 I 0.788
Bostr.5325s0047 Boechera stricta Bostr.5325s0047 I 0.786
Ciclev10022410m.g Citrus clementina Ciclev10022410m.g I 0.785
GLYMA19G44580 Glycine max GLYMA19G44580 I 0.785
orange1.1g029627m.g Citrus sinensis orange1.1g029627m.g I 0.785
POPTR_0002s17330 Populus trichocarpa POPTR_0002s17330 I 0.782
POPTR_0855s00200 Populus trichocarpa POPTR_0855s00200 I 0.782
SapurV1A.0013s0250 Salix purpurea SapurV1A.0013s0250 I 0.782
POPTR_0002s17320 Populus trichocarpa POPTR_0002s17320 I 0.782
cassava43608.valid.m1 Manihot esculenta cassava43608.valid.m1 I 0.780
GLYMA03G41910 Glycine max GLYMA03G41910 I 0.775
Bo5g002600 Brassica oleracea Bo5g002600 I 0.772
Thhalv10009402m.g Eutrema salsugineum Thhalv10009402m.g I 0.772
Bra033274 Brassica rapa Bra033274 I 0.772
Bo8g117810 Brassica oleracea Bo8g117810 I 0.768
Ca_01325 Cicer arietinum Ca_01325 I 0.765
VIT_15s0046g00310 Vitis vinifera VIT_15s0046g00310 I 0.761
AMTR_s00021p00223240 Amborella trichopoda AMTR_s00021p00223240 I 0.747
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.694
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.689
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.681
estExt_fgenesh1_pg.C_4800009 Physcomitrella patens estExt_fgenesh1_pg.C_4800009 D 0.677