Gorai.007G215900 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.007G215900 T008592_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9XHD4_PETHY
M09737_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2A_01 		0.864 0.980
Q9XHD3_PETHY
M09736_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2B_01 		0.836 0.929
RAP2.7
M00845_2.00 		Arabidopsis thaliana
KRCGRGGD
HCCYCGYM		 PBM
Franco-Zorrilla et al.(2014)
TOE1 		0.833 0.929
P93632_MAIZE
M09712_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GL15_01 		0.818 0.867
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G215900.1 AP2 158 207
Gorai.007G215900.1 AP2 250 301

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

241 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.868
TCM_000665 Theobroma cacao TCM_000665 I 0.868
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.865
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.865
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.865
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.865
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.865
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.865
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.865
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.865
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.865
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.865
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.865
PK02403.1 Cannabis sativa PK02403.1 I 0.865
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.865
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.865
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.865
Cla000716 Citrullus lanatus Cla000716 I 0.865
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.864
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.864
mgf009315m Mimulus guttatus mgf009315m I 0.864
Ca_09295 Cicer arietinum Ca_09295 I 0.864
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.864
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.864
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.864
Bra011741 Brassica rapa Bra011741 I 0.864
AP2 Arabidopsis thaliana AT4G36920 I 0.864
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.864
Bo1g004960 Brassica oleracea Bo1g004960 I 0.864
Bra017809 Brassica rapa Bra017809 I 0.864
Bo7g118400 Brassica oleracea Bo7g118400 I 0.864
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.864
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.864
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.863
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.863
29805.m001494 Ricinus communis 29805.m001494 I 0.863
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.862
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.862
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.861
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.861
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.861
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.861
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.861
Si012635m.g Setaria italica Si012635m.g I 0.861
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.861
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.861
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.861
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.861
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.860
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.858
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.858
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.856
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.856
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.856
Pm002492 Prunus mume Pm002492 I 0.856
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.856
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.856
MDP0000200319 Malus domestica MDP0000200319 I 0.856
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.856
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.856
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.856
TCM_022077 Theobroma cacao TCM_022077 I 0.856
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.855
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.855
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.855
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.855
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.855
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.855
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.855
OS05G0121600 Oryza sativa OS05G0121600 I 0.855
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.855
Ca_02499 Cicer arietinum Ca_02499 I 0.855
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.855
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.855
28752.m000339 Ricinus communis 28752.m000339 I 0.855
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.855
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.855
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.855
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.855
Si025305m.g Setaria italica Si025305m.g I 0.855
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.855
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.855
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.855
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.855
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.854
29169.m000017 Ricinus communis 29169.m000017 I 0.854
PK07183.1 Cannabis sativa PK07183.1 I 0.854
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.854
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.854
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.853
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.853
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.853
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.853
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.853
F775_32962 Aegilops tauschii F775_32962 I 0.853
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.853
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.853
TCM_042000 Theobroma cacao TCM_042000 I 0.853
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.852
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.852
mgf021945m Mimulus guttatus mgf021945m I 0.852
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.852
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.852
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.852
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.851
Cla018124 Citrullus lanatus Cla018124 I 0.851
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.851
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.851
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.850
MDP0000181606 Malus domestica MDP0000181606 I 0.850
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.850
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.850
Pm000974 Prunus mume Pm000974 I 0.850
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.850
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.850
Pm030172 Prunus mume Pm030172 I 0.848
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.848
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.848
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.848
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.848
MDP0000137561 Malus domestica MDP0000137561 I 0.847
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.847
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.845
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.844
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.844
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.844
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.844
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.844
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.844
Ca_14618 Cicer arietinum Ca_14618 I 0.843
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.842
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.842
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.842
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.842
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.842
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.842
OB06G29960 Oryza brachyantha OB06G29960 I 0.842
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.841
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.838
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.838
OBART07G08110 Oryza barthii OBART07G08110 I 0.838
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.838
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.838
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.838
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.838
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.838
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.838
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.838
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.838
OS07G0235800 Oryza sativa OS07G0235800 I 0.838
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.838
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.838
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.838
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.838
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.837
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.837
Ca_12010 Cicer arietinum Ca_12010 I 0.837
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.836
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.836
Si029636m.g Setaria italica Si029636m.g I 0.836
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.836
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.836
OB03G45870 Oryza brachyantha OB03G45870 I 0.836
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.836
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.836
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.835
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.834
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.834
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.834
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.834
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.833
Si036068m.g Setaria italica Si036068m.g I 0.833
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.833
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.833
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.833
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.833
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.833
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.833
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.833
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.833
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.833
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.833
Bra011939 Brassica rapa Bra011939 I 0.832
Bo4g070350 Brassica oleracea Bo4g070350 I 0.832
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.832
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.831
mgf005133m Mimulus guttatus mgf005133m I 0.830
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.830
mgf010466m Mimulus guttatus mgf010466m I 0.830
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.829
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.828
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.827
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.827
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.827
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.826
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.824
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.824
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.823
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.823
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.820
P93632_MAIZE Zea mays P93632_MAIZE D 0.818
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.818
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.818
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.816
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.816
MDP0000163645 Malus domestica MDP0000163645 I 0.816
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.815
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.815
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.814
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.814
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.814
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.814
TOE3 Arabidopsis thaliana AT5G67180 I 0.814
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.814
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.812
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.812
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.812
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.811
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.810
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.809
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.807
Bo7g064000 Brassica oleracea Bo7g064000 I 0.807
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.807
Bra012139 Brassica rapa Bra012139 I 0.807
OS03G0818800 Oryza sativa OS03G0818800 I 0.801
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.800
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.797
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.794
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.791
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.791
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.791
Cla020549 Citrullus lanatus Cla020549 I 0.790
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.786
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.778
Cla018549 Citrullus lanatus Cla018549 I 0.773
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.720
Si006371m.g Setaria italica Si006371m.g I 0.709
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.707
PK14490.1 Cannabis sativa PK14490.1 I 0.689
Solyc11g072600.1 Solanum lycopersicum Solyc11g072600.1 I 0.689
POPTR_0010s22320 Populus trichocarpa POPTR_0010s22320 I 0.678