CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.007G226500
(
Gossypium raimondii
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Gorai.007G226500
T008593_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q6SA75_TOBAC
M09733_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_01
0.947
0.971
Q6SA75_TOBAC
M09734_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_02
0.947
0.971
ANT
M02647_2.00
Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW
WDNRCHTBGGGAWNYGTGYNH
SELEX
Mathelier et al.(2014)
MA0571.1
0.914
0.933
ANT
M09705_2.00
Arabidopsis thaliana
CACRNWTCCCRAKG
CMTYGGGAWNYGTG
Transfac
Matys et al.(2006)
P$ANT_01
0.914
0.933
PLT1
M06622_2.00
Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN
NNDYCTYGRDWWNCGTGHH
Dap-seq
OMalley et al.(2016)
PLT1_col_a
0.894
0.924
PLT1
M06623_2.00
Arabidopsis thaliana
DYDCRNWTYYCRAG
CTYGRRAWNYGHRH
Dap-seq
OMalley et al.(2016)
PLT1_colamp_a
0.894
0.924
AIL7
M06688_2.00
Arabidopsis thaliana
CRNWTHYCRAG
CTYGRDAWNYG
Dap-seq
OMalley et al.(2016)
AIL7_col_a
0.823
0.857
AIL7
M06689_2.00
Arabidopsis thaliana
DCRNWTHYCRAG
CTYGRDAWNYGH
Dap-seq
OMalley et al.(2016)
AIL7_colamp_a
0.823
0.857
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.007G226500.1
AP2
327
387
SQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGP
Gorai.007G226500.1
AP2
429
481
SMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGA
Gorai.007G226500.2
AP2
327
384
SQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDLAALKYWGP
Gorai.007G226500.2
AP2
426
478
SMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGA
Links
Other
AP2
family TFs
Other
Gossypium raimondii
TFs
577 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy