Gorai.008G107700 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.008G107700 T008609_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD

HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.747 0.882
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH

DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.747 0.882
ERF043
M01627_2.00
Arabidopsis thaliana
YRCCGACA

TGTCGGYR
PBM
Weirauch et al.(2014)
pTH7413
0.743 0.824
ERF043
M06651_2.00
Arabidopsis thaliana
NNYCACCGACANHNNN

NNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a
0.743 0.824
ERF043
M06652_2.00
Arabidopsis thaliana
NNYCACCGACANHNNH

DNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_col
0.743 0.824
ERF035
M06631_2.00
Arabidopsis thaliana
YCACCGACANWDNH

DNHWNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
AT3G60490_col_a
0.735 0.863
ERF035
M06632_2.00
Arabidopsis thaliana
NNBCACCGACAHWNNN

NNNWDTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a
0.735 0.863
Q8LKX0_MAIZE
M09722_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DBF2_01
0.707 0.824
AT3G16280
M06618_2.00
Arabidopsis thaliana
NDNCACCGACANHN

NDNTGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
AT3G16280_col_a
0.706 0.804
AT3G16280
M06619_2.00
Arabidopsis thaliana
BCACCGACAHWNNN

NNNWDTGTCGGTGV
Dap-seq
OMalley et al.(2016)
AT3G16280_colamp_a
0.706 0.804
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G107700.1 AP2 68 119

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

Invalid Input OrderBy

346 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action