CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.008G280600
(
Gossypium raimondii
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Gorai.008G280600
T008635_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN
NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.692
0.780
DREB1G
M09707_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.692
0.780
DREB1B
M06643_2.00
Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH
Dap-seq
OMalley et al.(2016)
CBF1_col_a
0.679
0.840
DREB1B
M06644_2.00
Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF1_colamp_a
0.679
0.840
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.008G280600.1
AP2
45
96
PVYRGVRRRNPGKWVSEVREPNKKSRIWLGTFPTADMAARAHDVAAIALRGK
Gorai.008G280600.2
AP2
54
105
PVYRGVRRRNPGKWVSEVREPNKKSRIWLGTFPTADMAARAHDVAETFRTAE
Links
Other
AP2
family TFs
Other
Gossypium raimondii
TFs
42 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy