Gorai.009G104200 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.009G104200 T008643_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD

HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.680 0.933
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.843 0.959
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.829 0.949
P93632_MAIZE
M09712_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.797 0.837
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G104200.1 AP2 155 204
Gorai.009G104200.1 AP2 247 298
Gorai.009G104200.2 AP2 155 204
Gorai.009G104200.2 AP2 247 275
Gorai.009G104200.3 AP2 155 204
Gorai.009G104200.3 AP2 247 275

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

242 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.866
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.855
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.855
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.850
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.850
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.850
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.850
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.850
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.850
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.850
OS05G0121600 Oryza sativa OS05G0121600 I 0.850
Si025305m.g Setaria italica Si025305m.g I 0.850
28752.m000339 Ricinus communis 28752.m000339 I 0.850
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.850
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.850
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.850
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.850
Ca_02499 Cicer arietinum Ca_02499 I 0.850
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.850
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.850
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.850
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.850
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.850
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.850
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.850
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.850
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.849
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.849
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.849
MDP0000200319 Malus domestica MDP0000200319 I 0.849
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.849
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.849
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.849
Pm002492 Prunus mume Pm002492 I 0.849
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.849
TCM_022077 Theobroma cacao TCM_022077 I 0.849
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.849
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.847
PK07183.1 Cannabis sativa PK07183.1 I 0.847
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.847
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.846
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.846
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.846
MDP0000181606 Malus domestica MDP0000181606 I 0.845
Pm000974 Prunus mume Pm000974 I 0.845
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.845
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.845
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.844
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.844
TCM_042000 Theobroma cacao TCM_042000 I 0.844
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.844
F775_32962 Aegilops tauschii F775_32962 I 0.844
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.844
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.844
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.844
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.844
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.843
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.843
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.843
Bo1g004960 Brassica oleracea Bo1g004960 I 0.843
Bra011741 Brassica rapa Bra011741 I 0.843
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.843
Ca_09295 Cicer arietinum Ca_09295 I 0.843
Bo7g118400 Brassica oleracea Bo7g118400 I 0.843
AP2 Arabidopsis thaliana AT4G36920 I 0.843
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.843
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.843
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.843
Bra017809 Brassica rapa Bra017809 I 0.843
29805.m001494 Ricinus communis 29805.m001494 I 0.843
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.843
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.843
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.842
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.842
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.842
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.842
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.842
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.842
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.842
Cla000716 Citrullus lanatus Cla000716 I 0.842
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.842
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.842
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.842
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.842
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.842
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.842
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.842
PK02403.1 Cannabis sativa PK02403.1 I 0.842
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.842
mgf021945m Mimulus guttatus mgf021945m I 0.841
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.841
mgf009315m Mimulus guttatus mgf009315m I 0.841
Cla018124 Citrullus lanatus Cla018124 I 0.840
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.840
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.840
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.840
MDP0000163645 Malus domestica MDP0000163645 I 0.839
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.838
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.838
TCM_000665 Theobroma cacao TCM_000665 I 0.838
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.837
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.836
Si012635m.g Setaria italica Si012635m.g I 0.833
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.833
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.833
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.833
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.833
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.833
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.833
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.833
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.833
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.833
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.833
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.833
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.832
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.832
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.832
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.832
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.832
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.831
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.831
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.831
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.831
29169.m000017 Ricinus communis 29169.m000017 I 0.831
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.830
Ca_12010 Cicer arietinum Ca_12010 I 0.830
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.830
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.829
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.829
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.828
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.828
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.827
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.827
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.827
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.827
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.827
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.827
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.827
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.827
MDP0000137561 Malus domestica MDP0000137561 I 0.826
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.826
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.826
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.825
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.825
Pm030172 Prunus mume Pm030172 I 0.825
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.825
Ca_14618 Cicer arietinum Ca_14618 I 0.825
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.825
Bo4g070350 Brassica oleracea Bo4g070350 I 0.825
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.825
Bra011939 Brassica rapa Bra011939 I 0.825
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.824
OS07G0235800 Oryza sativa OS07G0235800 I 0.824
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.824
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.824
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.824
OBART07G08110 Oryza barthii OBART07G08110 I 0.824
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.824
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.824
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.824
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.824
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.824
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.822
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.822
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.822
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.822
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.822
Si036068m.g Setaria italica Si036068m.g I 0.822
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.822
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.821
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.821
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.821
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.820
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.820
Si029636m.g Setaria italica Si029636m.g I 0.820
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.820
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.820
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.820
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.820
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.820
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.820
OB06G29960 Oryza brachyantha OB06G29960 I 0.820
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.820
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.819
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.819
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.819
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.819
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.819
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.819
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.818
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.818
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.817
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.816
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.816
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.812
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.811
OB03G45870 Oryza brachyantha OB03G45870 I 0.811
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.811
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.808
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.806
mgf010466m Mimulus guttatus mgf010466m I 0.806
mgf005133m Mimulus guttatus mgf005133m I 0.806
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.805
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.805
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.804
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.804
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.803
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.802
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.801
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.799
Cla018549 Citrullus lanatus Cla018549 I 0.799
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.797
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.797
P93632_MAIZE Zea mays P93632_MAIZE D 0.797
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.795
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.792
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.791
TOE3 Arabidopsis thaliana AT5G67180 I 0.791
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.791
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.791
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.791
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.791
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.791
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.790
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.790
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.789
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.786
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.786
Bra012139 Brassica rapa Bra012139 I 0.785
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.785
Bo7g064000 Brassica oleracea Bo7g064000 I 0.785
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.783
Cla020549 Citrullus lanatus Cla020549 I 0.778
OS03G0818800 Oryza sativa OS03G0818800 I 0.775
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.774
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.715
PK14490.1 Cannabis sativa PK14490.1 I 0.708
Solyc11g072600.1 Solanum lycopersicum Solyc11g072600.1 I 0.708
Si006371m.g Setaria italica Si006371m.g I 0.704
cassava42433.valid.m1 Manihot esculenta cassava42433.valid.m1 N 0.697
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.684