Gorai.009G122000 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.009G122000 T008644_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PLT1
M06622_2.00
Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN

NNDYCTYGRDWWNCGTGHH
Dap-seq
OMalley et al.(2016)
PLT1_col_a
0.682 0.698
PLT1
M06623_2.00
Arabidopsis thaliana
DYDCRNWTYYCRAG

CTYGRRAWNYGHRH
Dap-seq
OMalley et al.(2016)
PLT1_colamp_a
0.682 0.698
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G122000.1 AP2 43 103
Gorai.009G122000.1 AP2 145 197
Gorai.009G122000.2 AP2 43 100
Gorai.009G122000.2 AP2 142 194
Gorai.009G122000.3 AP2 43 103
Gorai.009G122000.3 AP2 145 197
Gorai.009G122000.4 AP2 43 103
Gorai.009G122000.4 AP2 143 195
Gorai.009G122000.5 AP2 25 77

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

Invalid Input OrderBy

370 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action