Gorai.009G214300 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.009G214300 T008652_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-10
M00850_2.00
Arabidopsis thaliana
NNRCCGHCNN

NNGDCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DEAR4
0.793 0.920
ERF010
M06690_2.00
Arabidopsis thaliana
HHNHHDYCACCGHCD

HGDCGGTGRHDDNDD
Dap-seq
OMalley et al.(2016)
DEAR2_col_a
0.792 0.880
ERF010
M06691_2.00
Arabidopsis thaliana
NNNHDBCACCGACAH

DTGTCGGTGVHDNNN
Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a
0.792 0.880
ERF011
M06628_2.00
Arabidopsis thaliana
YHNHHDYCACCGHCN

NGDCGGTGRHDDNDR
Dap-seq
OMalley et al.(2016)
CEJ1_col_a
0.791 0.900
ERF011
M06629_2.00
Arabidopsis thaliana
NDNCACCGACMHH

DDKGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a
0.791 0.900
ERF008
M00844_2.00
Arabidopsis thaliana
SHRCCGHC

GDCGGYDS
PBM
Franco-Zorrilla et al.(2014)
DEAR3
0.790 0.920
ERF008
M01048_2.00
Arabidopsis thaliana
CRCCGMCN

NGKCGGYG
PBM
Sullivan et al.(2014)
pTH7672
0.790 0.920
ERF008
M06602_2.00
Arabidopsis thaliana
NNNNNBCACCGACAHHN

NDDTGTCGGTGVNNNNN
Dap-seq
OMalley et al.(2016)
DEAR3_col_a
0.790 0.920
ERF008
M06603_2.00
Arabidopsis thaliana
NNBCACCGACAWH

DWTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a
0.790 0.920
RAP2-9
M06633_2.00
Arabidopsis thaliana
NNNNNNNDBCACCGACMHH

DDKGTCGGTGVHNNNNNNN
Dap-seq
OMalley et al.(2016)
DEAR5_col_a
0.771 0.920
RAP2-9
M06634_2.00
Arabidopsis thaliana
NCACCGACMHH

DDKGTCGGTGN
Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a
0.771 0.920
RAP2-1
M06582_2.00
Arabidopsis thaliana
NHDYCRCCGMCAH

DTGKCGGYGRHDN
Dap-seq
OMalley et al.(2016)
RAP21_col_a
0.770 0.900
RAP2-1
M06583_2.00
Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN

NNNNNHDDTGTCGGTGVHDN
Dap-seq
OMalley et al.(2016)
RAP21_colamp_a
0.770 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G214300.1 AP2 28 79

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.826
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.826
Cla020961 Citrullus lanatus Cla020961 I 0.826
Bra014056 Brassica rapa Bra014056 I 0.826
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.824
TCM_033791 Theobroma cacao TCM_033791 I 0.824
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.820
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.820
Cla022937 Citrullus lanatus Cla022937 I 0.820
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.820
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.816
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.816
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.815
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.815
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.815
PK15612.1 Cannabis sativa PK15612.1 I 0.815
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.813
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.813
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.813
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.813
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.813
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.811
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.811
30170.m013843 Ricinus communis 30170.m013843 I 0.811
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.811
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.811
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.811
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.811
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.811
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.811
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.810
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.810
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.805
MDP0000125673 Malus domestica MDP0000125673 I 0.805
MDP0000179962 Malus domestica MDP0000179962 I 0.805
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.805
TCM_000669 Theobroma cacao TCM_000669 I 0.804
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.804
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.804
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.804
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.804
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.804
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.804
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.803
28718.m000038 Ricinus communis 28718.m000038 I 0.803
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.801
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.799
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.798
mgf000289m Mimulus guttatus mgf000289m I 0.798
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.798
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.797
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.797
MDP0000756341 Malus domestica MDP0000756341 I 0.795
mgf021115m Mimulus guttatus mgf021115m I 0.795
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.795
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.794
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.793
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.793
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.793
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.793
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.793
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.793
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.793
Bo4g151460 Brassica oleracea Bo4g151460 I 0.793
Bra032173 Brassica rapa Bra032173 I 0.793
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.793
Bra017811 Brassica rapa Bra017811 I 0.793
Bo7g118430 Brassica oleracea Bo7g118430 I 0.793
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.793
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.793
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.792
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.792
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.792
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.792
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.792
ERF010 Arabidopsis thaliana AT5G67190 D 0.792
Bra036061 Brassica rapa Bra036061 I 0.792
Bo8g079660 Brassica oleracea Bo8g079660 I 0.792
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.792
Bo7g063980 Brassica oleracea Bo7g063980 I 0.792
ERF011 Arabidopsis thaliana AT3G50260 D 0.791
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.791
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.791
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.791
ERF008 Arabidopsis thaliana AT2G23340 D 0.790
mgf006561m Mimulus guttatus mgf006561m I 0.789
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.788
Bra037124 Brassica rapa Bra037124 I 0.786
mgf025363m Mimulus guttatus mgf025363m I 0.786
Bo9g020380 Brassica oleracea Bo9g020380 I 0.786
Bo1g004940 Brassica oleracea Bo1g004940 I 0.783
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.782
Bra012140 Brassica rapa Bra012140 I 0.781
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.779
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.779
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.779
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.779
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.778
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.776
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.776
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.776
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.775
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.775
Ca_02170 Cicer arietinum Ca_02170 I 0.774
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.774
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.772
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.772
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.772
OS06G0166400 Oryza sativa OS06G0166400 I 0.772
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.772
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.772
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.772
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.772
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.772
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.772
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.772
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.772
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.772
OBART06G04460 Oryza barthii OBART06G04460 I 0.772
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.771
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.771
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.770
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.769
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.765
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.765
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.765
Ca_01556 Cicer arietinum Ca_01556 I 0.764
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.764
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.764
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.764
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.763
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.763
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.763
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.763
OS04G0648900 Oryza sativa OS04G0648900 I 0.763
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.763
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.763
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.763
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.763
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.763
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.763
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.763
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.763
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.763
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.762
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.759
Cla014175 Citrullus lanatus Cla014175 I 0.758
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.758
Bra011744 Brassica rapa Bra011744 I 0.758
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.754
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.753
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.752
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.751
Cla020550 Citrullus lanatus Cla020550 I 0.742
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.742
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.742
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.740
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.740
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.739
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.734
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.730
AMTR_s00051p00204250 Amborella trichopoda AMTR_s00051p00204250 I 0.706