Gorai.011G106200 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.011G106200 T008685_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.847 0.959
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.819 0.908
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD

HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.816 0.908
P93632_MAIZE
M09712_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.801 0.857
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.011G106200.10 AP2 156 205
Gorai.011G106200.10 AP2 248 299
Gorai.011G106200.1 AP2 156 205
Gorai.011G106200.1 AP2 248 299
Gorai.011G106200.2 AP2 156 205
Gorai.011G106200.2 AP2 248 299
Gorai.011G106200.3 AP2 156 205
Gorai.011G106200.3 AP2 248 299
Gorai.011G106200.4 AP2 133 182
Gorai.011G106200.4 AP2 225 276
Gorai.011G106200.5 AP2 156 205
Gorai.011G106200.5 AP2 248 299
Gorai.011G106200.6 AP2 156 205
Gorai.011G106200.6 AP2 248 299
Gorai.011G106200.7 AP2 156 205
Gorai.011G106200.7 AP2 248 299
Gorai.011G106200.8 AP2 156 205
Gorai.011G106200.8 AP2 248 299
Gorai.011G106200.9 AP2 156 205
Gorai.011G106200.9 AP2 248 299

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.863
29169.m000017 Ricinus communis 29169.m000017 I 0.863
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.862
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.862
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.859
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.848
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.848
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.848
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.848
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.848
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.848
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.848
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.848
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.848
Cla000716 Citrullus lanatus Cla000716 I 0.848
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.848
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.848
PK02403.1 Cannabis sativa PK02403.1 I 0.848
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.848
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.848
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.848
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.847
Ca_09295 Cicer arietinum Ca_09295 I 0.847
mgf009315m Mimulus guttatus mgf009315m I 0.847
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.847
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.847
29805.m001494 Ricinus communis 29805.m001494 I 0.847
AP2 Arabidopsis thaliana AT4G36920 I 0.847
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.847
Bra011741 Brassica rapa Bra011741 I 0.847
Bra017809 Brassica rapa Bra017809 I 0.847
Bo7g118400 Brassica oleracea Bo7g118400 I 0.847
Bo1g004960 Brassica oleracea Bo1g004960 I 0.847
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.847
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.847
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.847
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.847
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.846
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.846
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.845
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.845
TCM_000665 Theobroma cacao TCM_000665 I 0.845
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.842
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.841
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.841
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.840
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.839
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.839
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.839
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.839
TCM_022077 Theobroma cacao TCM_022077 I 0.839
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.839
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.839
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.839
MDP0000200319 Malus domestica MDP0000200319 I 0.839
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.839
Pm002492 Prunus mume Pm002492 I 0.839
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.838
PK07183.1 Cannabis sativa PK07183.1 I 0.838
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.838
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.838
OS05G0121600 Oryza sativa OS05G0121600 I 0.838
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.838
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.838
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.838
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.838
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.838
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.838
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.838
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.838
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.838
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.838
28752.m000339 Ricinus communis 28752.m000339 I 0.838
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.838
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.838
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.838
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.838
Ca_02499 Cicer arietinum Ca_02499 I 0.838
Si012635m.g Setaria italica Si012635m.g I 0.838
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.838
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.838
Si025305m.g Setaria italica Si025305m.g I 0.838
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.838
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.838
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.838
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.838
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.838
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.838
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.838
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.838
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.837
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.837
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.837
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.836
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.836
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.836
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.836
TCM_042000 Theobroma cacao TCM_042000 I 0.836
F775_32962 Aegilops tauschii F775_32962 I 0.836
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.836
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.836
mgf021945m Mimulus guttatus mgf021945m I 0.835
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.835
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.835
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.835
Cla018124 Citrullus lanatus Cla018124 I 0.834
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.834
MDP0000181606 Malus domestica MDP0000181606 I 0.834
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.834
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.834
Pm000974 Prunus mume Pm000974 I 0.834
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.834
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.833
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.833
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.833
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.832
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.832
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.832
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.832
Pm030172 Prunus mume Pm030172 I 0.832
MDP0000137561 Malus domestica MDP0000137561 I 0.831
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.831
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.830
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.827
Ca_14618 Cicer arietinum Ca_14618 I 0.826
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.825
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.825
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.825
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.825
OB06G29960 Oryza brachyantha OB06G29960 I 0.825
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.825
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.825
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.825
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.824
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.822
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.822
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.822
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.822
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.821
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.821
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.821
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.821
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.821
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.821
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.821
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.821
Ca_12010 Cicer arietinum Ca_12010 I 0.821
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.821
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.819
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.819
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.818
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.818
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.818
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.816
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.816
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.816
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.816
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.816
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.815
OS07G0235800 Oryza sativa OS07G0235800 I 0.815
Bo4g070350 Brassica oleracea Bo4g070350 I 0.815
Bra011939 Brassica rapa Bra011939 I 0.815
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.815
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.815
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.815
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.815
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.815
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.815
OBART07G08110 Oryza barthii OBART07G08110 I 0.815
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.815
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.815
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.814
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.814
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.814
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.813
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.813
OB03G45870 Oryza brachyantha OB03G45870 I 0.813
Si029636m.g Setaria italica Si029636m.g I 0.813
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.813
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.813
mgf005133m Mimulus guttatus mgf005133m I 0.813
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.813
mgf010466m Mimulus guttatus mgf010466m I 0.813
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.813
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.812
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.811
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.811
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.810
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.810
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.810
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.810
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.810
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.810
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.810
Si036068m.g Setaria italica Si036068m.g I 0.810
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.807
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.807
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.807
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.807
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.806
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.804
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.801
P93632_MAIZE Zea mays P93632_MAIZE D 0.801
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.801
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.799
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.798
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.798
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.798
TOE3 Arabidopsis thaliana AT5G67180 I 0.798
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.798
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.798
MDP0000163645 Malus domestica MDP0000163645 I 0.796
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.795
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.795
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.795
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.793
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.792
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.792
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.791
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.791
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.791
Bra012139 Brassica rapa Bra012139 I 0.791
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.791
Bo7g064000 Brassica oleracea Bo7g064000 I 0.791
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.786
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.782
Cla018549 Citrullus lanatus Cla018549 I 0.782
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.780
OS03G0818800 Oryza sativa OS03G0818800 I 0.778
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.775
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.775
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.774
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.774
Cla020549 Citrullus lanatus Cla020549 I 0.770
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.763
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.712
Si006371m.g Setaria italica Si006371m.g I 0.702
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.687