Lus10002015.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10002015.g T008724_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SHN2
M06660_2.00
Arabidopsis thaliana
DCCDCCRCCDCCDCCRCCRCY

RGYGGYGGHGGHGGYGGHGGH
Dap-seq
OMalley et al.(2016)
SHN3_col_a
0.743 0.843
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10002015 AP2 5 56

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Lus10002912.g Linum usitatissimum Lus10002912.g I 0.807
Carubv10002040m.g Capsella rubella Carubv10002040m.g I 0.767
Cagra.1110s0005 Capsella grandiflora Cagra.1110s0005 I 0.767
Bostr.29827s0278 Boechera stricta Bostr.29827s0278 I 0.757
orange1.1g028913m.g Citrus sinensis orange1.1g028913m.g I 0.754
Ciclev10009526m.g Citrus clementina Ciclev10009526m.g I 0.754
29848.m004632 Ricinus communis 29848.m004632 I 0.751
cassava10120.m1 Manihot esculenta cassava10120.m1 I 0.751
POPTR_0018s01680 Populus trichocarpa POPTR_0018s01680 I 0.751
Gorai.004G292600 Gossypium raimondii Gorai.004G292600 I 0.751
LjSGA_019003.1 Lotus japonicus LjSGA_019003.1 I 0.751
SapurV1A.0192s0020 Salix purpurea SapurV1A.0192s0020 I 0.751
Gorai.010G114800 Gossypium raimondii Gorai.010G114800 I 0.751
POPTR_0006s26990 Populus trichocarpa POPTR_0006s26990 I 0.751
cassava30505.valid.m1 Manihot esculenta cassava30505.valid.m1 I 0.751
GLYMA06G07240 Glycine max GLYMA06G07240 I 0.751
GLYMA04G07140 Glycine max GLYMA04G07140 I 0.751
GLYMA17G31900 Glycine max GLYMA17G31900 I 0.751
MTR_3g107380 Medicago truncatula MTR_3g107380 I 0.751
MTR_1g012470 Medicago truncatula MTR_1g012470 I 0.750
Ca_09050 Cicer arietinum Ca_09050 I 0.750
Ca_01764 Cicer arietinum Ca_01764 I 0.749
PRUPE_ppa023908mg Prunus persica PRUPE_ppa023908mg I 0.749
TCM_037007 Theobroma cacao TCM_037007 I 0.749
MDP0000178263 Malus domestica MDP0000178263 I 0.749
MDP0000287350 Malus domestica MDP0000287350 I 0.749
Pm004616 Prunus mume Pm004616 I 0.749
Gorai.001G033200 Gossypium raimondii Gorai.001G033200 I 0.747
gene11636-v1.0-hybrid Fragaria vesca gene11636-v1.0-hybrid I 0.746
Bo9g171490 Brassica oleracea Bo9g171490 I 0.743
Bra008985 Brassica rapa Bra008985 I 0.743
SHN2 Arabidopsis thaliana AT5G11190 D 0.743
Carubv10003050m.g Capsella rubella Carubv10003050m.g I 0.743
Carubv10003042m.g Capsella rubella Carubv10003042m.g I 0.743
Bostr.23997s0014 Boechera stricta Bostr.23997s0014 I 0.743
SHN3 Arabidopsis lyrata Al_scaffold_0006_1028 I 0.743
evm.TU.supercontig_259.2 Carica papaya evm.TU.supercontig_259.2 I 0.741
SapurV1A.0043s0690 Salix purpurea SapurV1A.0043s0690 I 0.737
VIT_04s0008g05440 Vitis vinifera VIT_04s0008g05440 I 0.736
SHN3 Arabidopsis thaliana AT5G25390 I 0.722
SHN2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002026 I 0.719
mgf017744m Mimulus guttatus mgf017744m I 0.719
Lus10019414.g Linum usitatissimum Lus10019414.g I 0.698
Gorai.011G082900 Gossypium raimondii Gorai.011G082900 I 0.697
Cla021283 Citrullus lanatus Cla021283 I 0.696
Cucsa.310360 Cucumis sativus Cucsa.310360 I 0.696
cassava40012.m1 Manihot esculenta cassava40012.m1 I 0.693
Bra036543 Brassica rapa Bra036543 I 0.693
Thhalv10005514m.g Eutrema salsugineum Thhalv10005514m.g I 0.688
Bo9g011380 Brassica oleracea Bo9g011380 I 0.683
Thhalv10015363m.g Eutrema salsugineum Thhalv10015363m.g I 0.683
PGSC0003DMG400030228 Solanum tuberosum PGSC0003DMG400030228 I 0.678