Lus10002953.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10002953.g T008729_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF021
M06593_2.00 		Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD
HGDCGGYGRHGRHGRHGRND		 Dap-seq
OMalley et al.(2016)
AT1G71450_col_a 		0.686 0.780
ERF021
M06594_2.00 		Arabidopsis thaliana
NHNNCRCCGHCDH
DHGDCGGYGNNDN		 Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a 		0.686 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10002953 AP2 10 61

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

106 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10041052.g Linum usitatissimum Lus10041052.g N 0.788
Lus10003513.g Linum usitatissimum Lus10003513.g N 0.785
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.770
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.770
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.770
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.770
Bra010210 Brassica rapa Bra010210 I 0.766
TCM_036270 Theobroma cacao TCM_036270 I 0.764
Bo5g086680 Brassica oleracea Bo5g086680 I 0.763
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.760
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.757
27805.m000021 Ricinus communis 27805.m000021 I 0.755
Bo8g027240 Brassica oleracea Bo8g027240 I 0.753
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.751
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.750
Pm004272 Prunus mume Pm004272 I 0.750
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.750
Bra028009 Brassica rapa Bra028009 I 0.750
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.749
ERF022 Arabidopsis thaliana AT1G33760 I 0.748
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.746
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.745
Bo6g046850 Brassica oleracea Bo6g046850 I 0.744
TCM_036269 Theobroma cacao TCM_036269 I 0.743
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.739
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I 0.738
MDP0000122739 Malus domestica MDP0000122739 I 0.737
MDP0000151428 Malus domestica MDP0000151428 I 0.737
MDP0000122740 Malus domestica MDP0000122740 I 0.737
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.736
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.736
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.735
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.730
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.729
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.729
28118.m000034 Ricinus communis 28118.m000034 I 0.728
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.727
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.724
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.723
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.721
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.721
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.715
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.715
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.715
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.715
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.715
Pm004269 Prunus mume Pm004269 I 0.715
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.715
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.714
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.714
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.714
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I 0.714
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.714
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.713
Cla012665 Citrullus lanatus Cla012665 I 0.713
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.712
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.710
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.710
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.709
MDP0000283350 Malus domestica MDP0000283350 I 0.708
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.708
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.707
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.707
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.706
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.705
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.705
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.704
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.703
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.702
Cla012661 Citrullus lanatus Cla012661 I 0.702
OB11G16300 Oryza brachyantha OB11G16300 I 0.702
Si026882m.g Setaria italica Si026882m.g I 0.699
LPERR11G07100 Leersia perrieri LPERR11G07100 I 0.695
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.695
Sb05g007135 Sorghum bicolor Sb05g007135 I 0.694
OMERI11G06840 Oryza meridionalis OMERI11G06840 I 0.694
ONIVA11G08160 Oryza nivara ONIVA11G08160 I 0.694
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I 0.694
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I 0.694
BGIOSGA034227 Oryza indica BGIOSGA034227 I 0.694
OPUNC11G07750 Oryza punctata OPUNC11G07750 I 0.694
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I 0.694
Pavir.J22217 Panicum virgatum Pavir.J22217 I 0.694
Pavir.J26137 Panicum virgatum Pavir.J26137 I 0.694
OS11G0242300 Oryza sativa OS11G0242300 I 0.694
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I 0.694
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.692
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.692
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.690
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.690
F775_17299 Aegilops tauschii F775_17299 I 0.690
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.690
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.690
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.690
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.689
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.688
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.686
Bra007975 Brassica rapa Bra007975 I 0.686
Bo2g072910 Brassica oleracea Bo2g072910 I 0.686
GSMUA_Achr11G12650_001 Musa acuminata GSMUA_Achr11G12650_001 N 0.686
ERF021 Arabidopsis thaliana AT1G71450 D 0.686
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.686
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.686
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.683
Bra016136 Brassica rapa Bra016136 I 0.680
GSMUA_Achr8G16250_001 Musa acuminata GSMUA_Achr8G16250_001 I 0.678