Lus10003581.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10003581.g T008733_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB2G
M06662_2.00
Arabidopsis thaliana
DCCRCCGCYDYHDYH

DRHDRHRGCGGYGGH
Dap-seq
OMalley et al.(2016)
At5g18450_col_a
0.714 0.816
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH

DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.711 0.857
DREB2D
M01611_2.00
Arabidopsis thaliana
NNRCCGHNN

NNDCGGYNN
PBM
Weirauch et al.(2014)
pTH8108
0.686 0.816
DREB2D
M06597_2.00
Arabidopsis thaliana
YHNYYDCCRCCGYYD

HRRCGGYGGHRRNDR
Dap-seq
OMalley et al.(2016)
At1g75490_col_a
0.686 0.816
DREB2D
M06598_2.00
Arabidopsis thaliana
HNNHDYCACCGHYWN

NWRDCGGTGRHDNND
Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a
0.686 0.816
Q8H769_WHEAT
M09721_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1_01
0.683 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10003581 AP2 36 87

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

110 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.745
29680.m001737 Ricinus communis 29680.m001737 I 0.739
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.721
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.718
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.718
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.717
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.715
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.714
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.714
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.714
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.714
Bo9g155940 Brassica oleracea Bo9g155940 I 0.714
DREB2G Arabidopsis thaliana AT5G18450 D 0.714
Bra002159 Brassica rapa Bra002159 I 0.714
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.712
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.712
PK07402.1 Cannabis sativa PK07402.1 D 0.711
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.706
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.706
Pm003634 Prunus mume Pm003634 I 0.706
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.706
mgf017629m Mimulus guttatus mgf017629m I 0.705
Bra006460 Brassica rapa Bra006460 I 0.704
Bo3g013160 Brassica oleracea Bo3g013160 I 0.704
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.702
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.701
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.701
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.701
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.699
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.697
Bo2g016490 Brassica oleracea Bo2g016490 I 0.695
Bra023674 Brassica rapa Bra023674 I 0.695
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.695
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.694
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.694
TCM_026121 Theobroma cacao TCM_026121 I 0.691
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.689
mgf024545m Mimulus guttatus mgf024545m I 0.689
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.688
Cla006713 Citrullus lanatus Cla006713 I 0.687
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.687
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.687
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.687
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.686
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.686
DREB2D Arabidopsis thaliana AT1G75490 D 0.686
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.686
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.686
Bra015840 Brassica rapa Bra015840 I 0.686
DREB2C Oryza sativa OS08G0565200 I 0.686
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.686
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.686
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.686
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.686
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.686
OB08G30790 Oryza brachyantha OB08G30790 I 0.686
Bo6g119660 Brassica oleracea Bo6g119660 I 0.686
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.686
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.686
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.686
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.686
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.686
OMERI08G18820 Oryza meridionalis OMERI08G18820 I 0.686
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.686
PK07829.1 Cannabis sativa PK07829.1 I 0.685
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.685
30170.m014115 Ricinus communis 30170.m014115 I 0.685
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.685
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.685
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.685
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.685
MDP0000880312 Malus domestica MDP0000880312 I 0.685
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.685
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.685
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.684
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.684
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.684
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.684
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.684
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.684
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.684
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.684
OB01G13930 Oryza brachyantha OB01G13930 I 0.684
OBART01G04210 Oryza barthii OBART01G04210 I 0.684
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.684
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.684
DREB2A Oryza sativa OS01G0165000 I 0.684
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.684
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.684
MLOC_66686 Hordeum vulgare MLOC_66686 I 0.683
TRIUR3_17973 Triticum urartu TRIUR3_17973 I 0.683
F775_05774 Aegilops tauschii F775_05774 I 0.683
Bo6g086320 Brassica oleracea Bo6g086320 I 0.683
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.683
Bra003752 Brassica rapa Bra003752 I 0.683
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I 0.683
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I 0.683
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D 0.683
Aquca_004_00452 Aquilegia coerulea Aquca_004_00452 I 0.681
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.680
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.680
MDP0000250924 Malus domestica MDP0000250924 I 0.680
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.680
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.680
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.679
Bo2g083920 Brassica oleracea Bo2g083920 I 0.678
Bra008200 Brassica rapa Bra008200 I 0.678
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.677
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.677
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.677