Lus10006173.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10006173.g T008753_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF021
M06593_2.00
Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD

HGDCGGYGRHGRHGRHGRND
Dap-seq
OMalley et al.(2016)
AT1G71450_col_a
0.746 0.820
ERF021
M06594_2.00
Arabidopsis thaliana
NHNNCRCCGHCDH

DHGDCGGYGNNDN
Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a
0.746 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10006173 AP2 11 62

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

85 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.832
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.800
28118.m000034 Ricinus communis 28118.m000034 I 0.795
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.775
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.775
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.775
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.775
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.774
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.772
MDP0000283350 Malus domestica MDP0000283350 I 0.772
Pm004269 Prunus mume Pm004269 I 0.772
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.765
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.765
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.764
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.764
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.757
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.757
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.749
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.747
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.747
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.747
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.746
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.746
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.746
Bo2g072910 Brassica oleracea Bo2g072910 I 0.746
ERF021 Arabidopsis thaliana AT1G71450 D 0.746
Bra007975 Brassica rapa Bra007975 I 0.746
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.745
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.743
Bra016136 Brassica rapa Bra016136 I 0.743
Bo6g113020 Brassica oleracea Bo6g113020 I 0.743
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.742
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.741
Cla012665 Citrullus lanatus Cla012665 I 0.740
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.740
TCM_036269 Theobroma cacao TCM_036269 I 0.737
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.735
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.735
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.732
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.730
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.728
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.727
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.726
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.722
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I 0.720
TCM_036270 Theobroma cacao TCM_036270 I 0.720
Bo8g027240 Brassica oleracea Bo8g027240 I 0.720
Bra028009 Brassica rapa Bra028009 I 0.720
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.718
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.717
ERF022 Arabidopsis thaliana AT1G33760 I 0.715
Pm004272 Prunus mume Pm004272 I 0.715
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.715
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.714
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.714
Bo6g046850 Brassica oleracea Bo6g046850 I 0.714
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I 0.713
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I 0.712
Bo6g094210 Brassica oleracea Bo6g094210 I 0.712
Bra003924 Brassica rapa Bra003924 I 0.712
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.712
MDP0000122740 Malus domestica MDP0000122740 I 0.710
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.710
MDP0000122739 Malus domestica MDP0000122739 I 0.710
MDP0000151428 Malus domestica MDP0000151428 I 0.710
Lus10041052.g Linum usitatissimum Lus10041052.g N 0.709
Cucsa.237170 Cucumis sativus Cucsa.237170 I 0.705
Cla012661 Citrullus lanatus Cla012661 I 0.705
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.704
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.702
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I 0.702
27805.m000021 Ricinus communis 27805.m000021 I 0.699
Bra010210 Brassica rapa Bra010210 I 0.698
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I 0.693
Bo5g086680 Brassica oleracea Bo5g086680 I 0.692
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.684
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.683
Si026882m.g Setaria italica Si026882m.g I 0.681
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.679
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.679
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.677
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.677
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.677
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.677
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.677