Lus10008939.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10008939.g T008765_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10008939 AP2 138 195
Lus10008939 AP2 237 289

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

291 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Lus10028880.g Linum usitatissimum Lus10028880.g N 0.924
evm.TU.supercontig_54.28 Carica papaya evm.TU.supercontig_54.28 N 0.866
cassava16315.m1 Manihot esculenta cassava16315.m1 N 0.862
Cla020765 Citrullus lanatus Cla020765 N 0.861
Bra003178 Brassica rapa Bra003178 N 0.861
TRIUR3_24036 Triticum urartu TRIUR3_24036 N 0.859
30069.m000440 Ricinus communis 30069.m000440 N 0.858
Pm017032 Prunus mume Pm017032 N 0.858
Bra007066 Brassica rapa Bra007066 N 0.857
WRI1 Arabidopsis lyrata fgenesh2_kg.5__1822__AT3G54320.1 N 0.857
Thhalv10010394m.g Eutrema salsugineum Thhalv10010394m.g N 0.857
POPTR_0010s25340 Populus trichocarpa POPTR_0010s25340 N 0.856
Ciclev10003896m.g Citrus clementina Ciclev10003896m.g N 0.854
orange1.1g036423m.g Citrus sinensis orange1.1g036423m.g N 0.854
e_gw1.32.189.1 Physcomitrella patens e_gw1.32.189.1 N 0.853
ONIVA03G39530 Oryza nivara ONIVA03G39530 N 0.852
OMERI12G00060 Oryza meridionalis OMERI12G00060 N 0.852
OMERI11G02080 Oryza meridionalis OMERI11G02080 N 0.852
OPUNC11G01540 Oryza punctata OPUNC11G01540 N 0.852
ONIVA11G01800 Oryza nivara ONIVA11G01800 N 0.852
OPUNC12G01560 Oryza punctata OPUNC12G01560 N 0.852
ORGLA12G0015400 Oryza glaberrima ORGLA12G0015400 N 0.852
BGIOSGA034580 Oryza indica BGIOSGA034580 N 0.852
BGIOSGA036704 Oryza indica BGIOSGA036704 N 0.852
GRMZM2G174834 Zea mays GRMZM2G174834 I 0.851
SELMODRAFT_85823 Selaginella moellendorffii SELMODRAFT_85823 N 0.851
PGSC0003DMG400027502 Solanum tuberosum PGSC0003DMG400027502 N 0.850
LPERR12G01610 Leersia perrieri LPERR12G01610 N 0.839
mgf019116m Mimulus guttatus mgf019116m N 0.839
SapurV1A.0070s0630 Salix purpurea SapurV1A.0070s0630 N 0.837
F775_06373 Aegilops tauschii F775_06373 N 0.836
GSMUA_Achr8G09350_001 Musa acuminata GSMUA_Achr8G09350_001 I 0.835
MTR_4g007770 Medicago truncatula MTR_4g007770 N 0.834
GLYMA08G23630 Glycine max GLYMA08G23630 I 0.833
MTR_8g044070 Medicago truncatula MTR_8g044070 N 0.833
Ca_17532 Cicer arietinum Ca_17532 N 0.833
Eucgr.J00316 Eucalyptus grandis Eucgr.J00316 I 0.832
OS12G0126300 Oryza sativa OS12G0126300 I 0.828
GRMZM2G131266 Zea mays GRMZM2G131266 N 0.828
ORGLA11G0014900 Oryza glaberrima ORGLA11G0014900 I 0.828
OB12G11690 Oryza brachyantha OB12G11690 I 0.828
Traes_5AL_F8DEBE8E7 Triticum aestivum Traes_5AL_F8DEBE8E7 I 0.828
OB11G11380 Oryza brachyantha OB11G11380 I 0.828
Traes_5DL_2CF55DD05 Triticum aestivum Traes_5DL_2CF55DD05 I 0.828
Si026433m.g Setaria italica Si026433m.g N 0.827
Si012026m.g Setaria italica Si012026m.g N 0.827
OBART12G01740 Oryza barthii OBART12G01740 N 0.826
BRADI4G43877 Brachypodium distachyon BRADI4G43877 I 0.824
GRMZM2G124524 Zea mays GRMZM2G124524 I 0.823
Sb05g001790 Sorghum bicolor Sb05g001790 I 0.823
Ca_20689 Cicer arietinum Ca_20689 N 0.822
evm.TU.supercontig_14.38 Carica papaya evm.TU.supercontig_14.38 N 0.822
Gorai.001G256900 Gossypium raimondii Gorai.001G256900 N 0.820
ORUFI08G18170 Oryza rufipogon ORUFI08G18170 N 0.820
LPERR08G13500 Leersia perrieri LPERR08G13500 N 0.820
OMERI08G13500 Oryza meridionalis OMERI08G13500 N 0.820
OGLUM08G17060 Oryza glumaepatula OGLUM08G17060 N 0.820
ONIVA08G17820 Oryza nivara ONIVA08G17820 N 0.820
Sb07g021800 Sorghum bicolor Sb07g021800 N 0.819
SapurV1A.0036s0830 Salix purpurea SapurV1A.0036s0830 N 0.818
Bo6g067950 Brassica oleracea Bo6g067950 I 0.818
Gorai.011G225700 Gossypium raimondii Gorai.011G225700 I 0.818
OPUNC08G14310 Oryza punctata OPUNC08G14310 N 0.817
Gorai.006G025100 Gossypium raimondii Gorai.006G025100 N 0.817
TCM_044588 Theobroma cacao TCM_044588 I 0.815
mgf019814m Mimulus guttatus mgf019814m N 0.815
gene00377-v1.0-hybrid Fragaria vesca gene00377-v1.0-hybrid N 0.814
Cagra.0562s0024 Capsella grandiflora Cagra.0562s0024 I 0.814
WRI1 Arabidopsis thaliana AT3G54320 I 0.814
Carubv10018845m.g Capsella rubella Carubv10018845m.g I 0.814
Bostr.0697s0045 Boechera stricta Bostr.0697s0045 I 0.814
Cucsa.282940 Cucumis sativus Cucsa.282940 N 0.814
gene15913-v1.0-hybrid Fragaria vesca gene15913-v1.0-hybrid N 0.813
Traes_5BL_B6C71B544 Triticum aestivum Traes_5BL_B6C71B544 I 0.813
Bo8g083590 Brassica oleracea Bo8g083590 I 0.813
OGLUM09G11130 Oryza glumaepatula OGLUM09G11130 I 0.812
OMERI09G08520 Oryza meridionalis OMERI09G08520 N 0.812
MDP0000231748 Malus domestica MDP0000231748 N 0.812
Pm013856 Prunus mume Pm013856 N 0.812
ORUFI09G11510 Oryza rufipogon ORUFI09G11510 N 0.812
LPERR09G07570 Leersia perrieri LPERR09G07570 N 0.812
PRUPE_ppa007768mg Prunus persica PRUPE_ppa007768mg N 0.812
OBART09G10730 Oryza barthii OBART09G10730 N 0.812
BRADI4G30617 Brachypodium distachyon BRADI4G30617 I 0.811
Si013842m.g Setaria italica Si013842m.g N 0.810
AMTR_s00101p00022740 Amborella trichopoda AMTR_s00101p00022740 N 0.810
mg013664m Mimulus guttatus mg013664m N 0.809
cassava11368.m1 Manihot esculenta cassava11368.m1 N 0.809
MDP0000133423 Malus domestica MDP0000133423 N 0.809
VIT_14s0108g00050 Vitis vinifera VIT_14s0108g00050 N 0.809
PRUPE_ppa024318mg Prunus persica PRUPE_ppa024318mg N 0.809
POPTR_0017s11470 Populus trichocarpa POPTR_0017s11470 N 0.809
MDP0000318457 Malus domestica MDP0000318457 N 0.809
29822.m003477 Ricinus communis 29822.m003477 N 0.809
Bo6g124080 Brassica oleracea Bo6g124080 N 0.809
TCM_038442 Theobroma cacao TCM_038442 N 0.809
GLYMA04G24010 Glycine max GLYMA04G24010 N 0.809
gene27659-v1.0-hybrid Fragaria vesca gene27659-v1.0-hybrid N 0.809
GLYMA06G30840 Glycine max GLYMA06G30840 N 0.809
POPTR_0018s11110 Populus trichocarpa POPTR_0018s11110 N 0.808
Lus10001553.g Linum usitatissimum Lus10001553.g N 0.808
MTR_2g460730 Medicago truncatula MTR_2g460730 N 0.808
VIT_01s0026g01690 Vitis vinifera VIT_01s0026g01690 N 0.808
chr6.CM0041.30.nd Lotus japonicus chr6.CM0041.30.nd N 0.808
Ciclev10010237m.g Citrus clementina Ciclev10010237m.g N 0.808
OS09G0423800 Oryza sativa OS09G0423800 I 0.807
BGIOSGA030783 Oryza indica BGIOSGA030783 I 0.807
OB09G17420 Oryza brachyantha OB09G17420 I 0.807
Sb02g025080 Sorghum bicolor Sb02g025080 I 0.807
ORGLA09G0079700 Oryza glaberrima ORGLA09G0079700 I 0.807
GLYMA08G24420 Glycine max GLYMA08G24420 N 0.807
Ca_10533 Cicer arietinum Ca_10533 N 0.807
ONIVA09G10420 Oryza nivara ONIVA09G10420 I 0.807
GRMZM2G141219 Zea mays GRMZM2G141219 I 0.807
GSMUA_Achr3G03630_001 Musa acuminata GSMUA_Achr3G03630_001 I 0.807
Si030129m.g Setaria italica Si030129m.g I 0.806
PK04008.1 Cannabis sativa PK04008.1 I 0.805
AMTR_s00019p00086450 Amborella trichopoda AMTR_s00019p00086450 I 0.805
MTR_8g044040 Medicago truncatula MTR_8g044040 N 0.804
Cla015555 Citrullus lanatus Cla015555 N 0.804
Eucgr.F03987 Eucalyptus grandis Eucgr.F03987 I 0.804
MTR_6g011490 Medicago truncatula MTR_6g011490 N 0.804
Eucgr.B03412 Eucalyptus grandis Eucgr.B03412 I 0.804
GLYMA15G34770 Glycine max GLYMA15G34770 N 0.804
Cla019044 Citrullus lanatus Cla019044 N 0.804
Lus10024101.g Linum usitatissimum Lus10024101.g I 0.804
Gorai.009G122000 Gossypium raimondii Gorai.009G122000 I 0.804
Cucsa.106090 Cucumis sativus Cucsa.106090 N 0.802
TCM_027569 Theobroma cacao TCM_027569 I 0.802
Carubv10020688m.g Capsella rubella Carubv10020688m.g N 0.801
BRADI3G36820 Brachypodium distachyon BRADI3G36820 N 0.801
Lus10041618.g Linum usitatissimum Lus10041618.g I 0.801
evm.TU.supercontig_199.10 Carica papaya evm.TU.supercontig_199.10 I 0.800
Bra035137 Brassica rapa Bra035137 I 0.800
SapurV1A.0153s0330 Salix purpurea SapurV1A.0153s0330 I 0.800
POPTR_0001s03300 Populus trichocarpa POPTR_0001s03300 I 0.800
Aquca_048_00034 Aquilegia coerulea Aquca_048_00034 I 0.800
VIT_09s0018g01650 Vitis vinifera VIT_09s0018g01650 I 0.800
Pm008629 Prunus mume Pm008629 I 0.800
SapurV1A.1535s0040 Salix purpurea SapurV1A.1535s0040 I 0.800
SapurV1A.1603s0090 Salix purpurea SapurV1A.1603s0090 I 0.800
Gorai.012G098200 Gossypium raimondii Gorai.012G098200 I 0.800
PRUPE_ppa023152mg Prunus persica PRUPE_ppa023152mg I 0.800
Gorai.012G056300 Gossypium raimondii Gorai.012G056300 N 0.799
Bostr.20129s0410 Boechera stricta Bostr.20129s0410 I 0.799
Pavir.Bb02213 Panicum virgatum Pavir.Bb02213 I 0.798
GSMUA_Achr5G04670_001 Musa acuminata GSMUA_Achr5G04670_001 N 0.798
GLYMA07G02380 Glycine max GLYMA07G02380 I 0.796
Cucsa.170790 Cucumis sativus Cucsa.170790 I 0.796
Ciclev10025985m.g Citrus clementina Ciclev10025985m.g I 0.795
orange1.1g018990m.g Citrus sinensis orange1.1g018990m.g I 0.795
fgenesh2_kg.2__2276__AT1G79700.2 Arabidopsis lyrata fgenesh2_kg.2__2276__AT1G79700.2 I 0.795
Solyc01g096860.1 Solanum lycopersicum Solyc01g096860.1 I 0.795
ADAP Arabidopsis lyrata fgenesh2_kg.1__1760__AT1G16060.1 N 0.794
PK26651.1 Cannabis sativa PK26651.1 I 0.794
VIT_11s0037g00870 Vitis vinifera VIT_11s0037g00870 N 0.794
Bostr.7128s0222 Boechera stricta Bostr.7128s0222 N 0.794
Solyc03g117720.2 Solanum lycopersicum Solyc03g117720.2 I 0.793
GLYMA02G36880 Glycine max GLYMA02G36880 I 0.793
GLYMA17G07860 Glycine max GLYMA17G07860 I 0.793
chr2.CM0225.20.nc Lotus japonicus chr2.CM0225.20.nc N 0.793
Bo5g021520 Brassica oleracea Bo5g021520 N 0.793
MTR_8g468920 Medicago truncatula MTR_8g468920 N 0.792
30114.m000507 Ricinus communis 30114.m000507 N 0.791
AT1G79700 Arabidopsis thaliana AT1G79700 I 0.789
chr2.CM0608.630.nc Lotus japonicus chr2.CM0608.630.nc N 0.789
MTR_7g009410 Medicago truncatula MTR_7g009410 N 0.787
Cagra.1725s0044 Capsella grandiflora Cagra.1725s0044 I 0.787
SELMODRAFT_129793 Selaginella moellendorffii SELMODRAFT_129793 N 0.787
Aquca_016_00348 Aquilegia coerulea Aquca_016_00348 I 0.786
Ciclev10013824m.g Citrus clementina Ciclev10013824m.g N 0.786
Eucgr.J02131 Eucalyptus grandis Eucgr.J02131 N 0.786
POPTR_0010s10290 Populus trichocarpa POPTR_0010s10290 N 0.786
orange1.1g042319m.g Citrus sinensis orange1.1g042319m.g N 0.786
Eucgr.C00238 Eucalyptus grandis Eucgr.C00238 N 0.785
Carubv10010918m.g Capsella rubella Carubv10010918m.g N 0.785
PRUPE_ppa022978mg Prunus persica PRUPE_ppa022978mg N 0.784
OLONG_002862 Oryza longistaminata OLONG_002862 N 0.784
PRUPE_ppa022243mg Prunus persica PRUPE_ppa022243mg N 0.784
Pm006561 Prunus mume Pm006561 N 0.784
Gorai.009G008800 Gossypium raimondii Gorai.009G008800 I 0.784
OPUNC09G09320 Oryza punctata OPUNC09G09320 N 0.784
Pm015847 Prunus mume Pm015847 N 0.784
Thhalv10008118m.g Eutrema salsugineum Thhalv10008118m.g I 0.783
Ca_03306 Cicer arietinum Ca_03306 N 0.783
AMTR_s00202p00017170 Amborella trichopoda AMTR_s00202p00017170 N 0.783
OS08G0442400 Oryza sativa OS08G0442400 I 0.783
ADAP Arabidopsis thaliana AT1G16060 I 0.783
ORGLA08G0142100 Oryza glaberrima ORGLA08G0142100 I 0.783
BGIOSGA028751 Oryza indica BGIOSGA028751 I 0.783
BRADI2G48130 Brachypodium distachyon BRADI2G48130 N 0.782
Bra026082 Brassica rapa Bra026082 I 0.782
Gorai.013G003400 Gossypium raimondii Gorai.013G003400 I 0.782
Solyc12g010490.1 Solanum lycopersicum Solyc12g010490.1 N 0.781
TCM_018386 Theobroma cacao TCM_018386 N 0.781
MDP0000166059 Malus domestica MDP0000166059 N 0.781
Traes_7AS_A70A185F1 Triticum aestivum Traes_7AS_A70A185F1 N 0.780
Si007857m.g Setaria italica Si007857m.g N 0.780
Lus10030671.g Linum usitatissimum Lus10030671.g N 0.779
Lus10005253.g Linum usitatissimum Lus10005253.g N 0.779
WRI1 Vitis vinifera VIT_13s0047g00340 N 0.779
Gorai.008G182500 Gossypium raimondii Gorai.008G182500 N 0.778
ORGLA06G0029800 Oryza glaberrima ORGLA06G0029800 N 0.777
BGIOSGA021927 Oryza indica BGIOSGA021927 N 0.777
GRMZM2G073982 Zea mays GRMZM2G073982 N 0.777
Pavir.J19507 Panicum virgatum Pavir.J19507 N 0.777
OBART06G03040 Oryza barthii OBART06G03040 N 0.777
ONIVA06G03970 Oryza nivara ONIVA06G03970 N 0.777
ORUFI06G03000 Oryza rufipogon ORUFI06G03000 N 0.777
Cla017294 Citrullus lanatus Cla017294 N 0.777
Sb10g003160 Sorghum bicolor Sb10g003160 N 0.777
TCM_011797 Theobroma cacao TCM_011797 N 0.776
GLYMA18G16236 Glycine max GLYMA18G16236 N 0.776
evm.TU.contig_28586.3 Carica papaya evm.TU.contig_28586.3 N 0.776
e_gw1.261.8.1 Physcomitrella patens e_gw1.261.8.1 N 0.775
GLYMA08G40831 Glycine max GLYMA08G40831 N 0.774
MTR_4g130270 Medicago truncatula MTR_4g130270 I 0.774
Solyc06g068570.2 Solanum lycopersicum Solyc06g068570.2 I 0.773
cassava39084.m1 Manihot esculenta cassava39084.m1 I 0.773
Lus10037209.g Linum usitatissimum Lus10037209.g I 0.772
Pm015843 Prunus mume Pm015843 N 0.772
Lus10036719.g Linum usitatissimum Lus10036719.g I 0.772
MDP0000297698 Malus domestica MDP0000297698 N 0.771
MDP0000281784 Malus domestica MDP0000281784 I 0.771
MDP0000186581 Malus domestica MDP0000186581 N 0.771
gene01262-v1.0-hybrid Fragaria vesca gene01262-v1.0-hybrid I 0.770
PK24809.1 Cannabis sativa PK24809.1 I 0.770
Aquca_074_00065 Aquilegia coerulea Aquca_074_00065 I 0.769
Traes_4AL_C863DCEDC Triticum aestivum Traes_4AL_C863DCEDC N 0.769
Lus10030792.g Linum usitatissimum Lus10030792.g N 0.769
PGSC0003DMG400002399 Solanum tuberosum PGSC0003DMG400002399 N 0.769
mgf017413m Mimulus guttatus mgf017413m N 0.768
Eucgr.I01921 Eucalyptus grandis Eucgr.I01921 N 0.768
Ciclev10033673m.g Citrus clementina Ciclev10033673m.g N 0.768
GLYMA09G37540 Glycine max GLYMA09G37540 N 0.767
GLYMA18G49101 Glycine max GLYMA18G49101 N 0.767
Solyc06g066390.1 Solanum lycopersicum Solyc06g066390.1 N 0.766
Lus10013268.g Linum usitatissimum Lus10013268.g N 0.764
mgf008907m Mimulus guttatus mgf008907m I 0.764
OB01G43640 Oryza brachyantha OB01G43640 N 0.762
Thhalv10018877m.g Eutrema salsugineum Thhalv10018877m.g N 0.762
OS06G0145700 Oryza sativa OS06G0145700 N 0.761
Pavir.J02216 Panicum virgatum Pavir.J02216 I 0.758
MDP0000206674 Malus domestica MDP0000206674 N 0.758
Pavir.J34675 Panicum virgatum Pavir.J34675 I 0.758
Si022186m.g Setaria italica Si022186m.g I 0.758
OMERI01G26790 Oryza meridionalis OMERI01G26790 I 0.758
GRMZM2G113078 Zea mays GRMZM2G113078 I 0.758
LPERR05G19870 Leersia perrieri LPERR05G19870 I 0.758
Sb09g026800 Sorghum bicolor Sb09g026800 I 0.758
POPTR_0003s18350 Populus trichocarpa POPTR_0003s18350 N 0.757
F775_02400 Aegilops tauschii F775_02400 I 0.757
Cagra.2238s0017 Capsella grandiflora Cagra.2238s0017 N 0.757
TRIUR3_01982 Triticum urartu TRIUR3_01982 I 0.757
BRADI2G18570 Brachypodium distachyon BRADI2G18570 I 0.757
SELMODRAFT_78076 Selaginella moellendorffii SELMODRAFT_78076 N 0.757
OGLUM11G01480 Oryza glumaepatula OGLUM11G01480 N 0.755
POPTR_0006s19360 Populus trichocarpa POPTR_0006s19360 N 0.747
PDK_20s13009417g005 Phoenix dactylifera PDK_20s13009417g005 N 0.745
OMERI06G03270 Oryza meridionalis OMERI06G03270 N 0.744
LPERR01G30020 Leersia perrieri LPERR01G30020 N 0.743
orange1.1g043551m.g Citrus sinensis orange1.1g043551m.g N 0.741
SELMODRAFT_108361 Selaginella moellendorffii SELMODRAFT_108361 N 0.741
Aquca_002_00506 Aquilegia coerulea Aquca_002_00506 I 0.739
OB05G31600 Oryza brachyantha OB05G31600 I 0.739
OLONG_014256 Oryza longistaminata OLONG_014256 I 0.736
OS05G0536250 Oryza sativa OS05G0536250 I 0.736
BGIOSGA017664 Oryza indica BGIOSGA017664 I 0.736
OPUNC05G21440 Oryza punctata OPUNC05G21440 I 0.736
LjSGA_030627.1 Lotus japonicus LjSGA_030627.1 N 0.734
Sb03g037750 Sorghum bicolor Sb03g037750 N 0.731
F775_02064 Aegilops tauschii F775_02064 N 0.730
GRMZM2G451031 Zea mays GRMZM2G451031 N 0.726
Traes_1BL_3EFA4A82D Triticum aestivum Traes_1BL_3EFA4A82D N 0.720
OB08G23780 Oryza brachyantha OB08G23780 N 0.711
Pavir.Fa00925 Panicum virgatum Pavir.Fa00925 N 0.711
POPTR_0008s01260 Populus trichocarpa POPTR_0008s01260 N 0.709
Pavir.J08481 Panicum virgatum Pavir.J08481 N 0.707
Pavir.J34903 Panicum virgatum Pavir.J34903 N 0.707
ORUFI01G38130 Oryza rufipogon ORUFI01G38130 N 0.693
BGIOSGA004677 Oryza indica BGIOSGA004677 N 0.693
OBART01G34800 Oryza barthii OBART01G34800 N 0.693
ORGLA01G0286200 Oryza glaberrima ORGLA01G0286200 N 0.693
ONIVA01G39780 Oryza nivara ONIVA01G39780 N 0.693
OGLUM01G38820 Oryza glumaepatula OGLUM01G38820 N 0.693
Si004222m.g Setaria italica Si004222m.g N 0.692
TRIUR3_04644 Triticum urartu TRIUR3_04644 N 0.692
Pavir.Ea03213 Panicum virgatum Pavir.Ea03213 N 0.692
EuGene.0000120285 Micromonas pusilla EuGene.0000120285 I 0.687
BRADI1G64240 Brachypodium distachyon BRADI1G64240 I 0.680
Pavir.Ia03819 Panicum virgatum Pavir.Ia03819 I 0.679