Lus10009374.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10009374.g T008767_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.857 0.990
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.827 0.918
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD

HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.826 0.939
P93632_MAIZE
M09712_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.811 0.867
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10009374 AP2 116 165
Lus10009374 AP2 208 259

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

240 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.827
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.857
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.826
P93632_MAIZE Zea mays P93632_MAIZE D 0.811
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.856
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.795
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.832
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.849
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.868
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.801
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.849
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.871
29805.m001494 Ricinus communis 29805.m001494 I 0.855
29169.m000017 Ricinus communis 29169.m000017 I 0.871
28752.m000339 Ricinus communis 28752.m000339 I 0.849
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.842
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.849
mgf005133m Mimulus guttatus mgf005133m I 0.821
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.826
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.857
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.857
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.826
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.806
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.857
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.806
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.849
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.839
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.836
mgf021945m Mimulus guttatus mgf021945m I 0.846
mgf010466m Mimulus guttatus mgf010466m I 0.821
mgf009315m Mimulus guttatus mgf009315m I 0.856
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.806
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.849
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.698
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.847
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.847
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.847
TCM_042000 Theobroma cacao TCM_042000 I 0.847
TCM_022077 Theobroma cacao TCM_022077 I 0.848
TCM_000665 Theobroma cacao TCM_000665 I 0.853
Solyc11g072600.1 Solanum lycopersicum Solyc11g072600.1 I 0.679
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.846
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.809
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.857
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.856
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.849
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.856
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.848
Pm030172 Prunus mume Pm030172 I 0.840
Pm002492 Prunus mume Pm002492 I 0.848
Pm000974 Prunus mume Pm000974 I 0.844
Cla020549 Citrullus lanatus Cla020549 I 0.779
Cla018549 Citrullus lanatus Cla018549 I 0.790
Cla018124 Citrullus lanatus Cla018124 I 0.842
Cla000716 Citrullus lanatus Cla000716 I 0.856
Ca_14618 Cicer arietinum Ca_14618 I 0.836
Ca_12010 Cicer arietinum Ca_12010 I 0.829
Ca_09295 Cicer arietinum Ca_09295 I 0.857
Ca_02499 Cicer arietinum Ca_02499 I 0.849
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.826
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.850
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.849
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.820
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.800
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.821
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.820
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.849
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.849
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.804
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.821
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.801
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.849
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.820
MDP0000200319 Malus domestica MDP0000200319 I 0.848
MDP0000181606 Malus domestica MDP0000181606 I 0.844
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.823
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.843
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.845
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.841
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.849
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.842
PK14490.1 Cannabis sativa PK14490.1 I 0.679
PK07183.1 Cannabis sativa PK07183.1 I 0.846
PK02403.1 Cannabis sativa PK02403.1 I 0.856
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.713
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.826
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.816
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.835
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.856
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.848
MDP0000163645 Malus domestica MDP0000163645 I 0.805
MDP0000137561 Malus domestica MDP0000137561 I 0.841
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.848
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.790
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.840
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.800
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.856
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.784
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.829
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.849
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.840
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.809
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.801
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.844
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.820
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.856
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.847
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.835
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.784
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.823
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.840
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.823
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.872
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.816
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.815
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.844
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.862
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.832
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.853
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.853
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.773
Si036068m.g Setaria italica Si036068m.g I 0.820
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.831
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.856
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.857
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.826
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.848
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.820
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.844
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.792
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.821
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.848
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.811
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.823
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.856
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.856
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.844
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.826
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.785
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.856
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.827
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.812
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.848
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.805
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.852
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.818
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.826
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.830
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.815
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.820
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.821
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.849
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.849
Bo7g118400 Brassica oleracea Bo7g118400 I 0.857
Bo7g064000 Brassica oleracea Bo7g064000 I 0.800
Bo4g070350 Brassica oleracea Bo4g070350 I 0.825
Bo1g004960 Brassica oleracea Bo1g004960 I 0.857
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.823
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.835
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.849
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.848
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.831
TOE3 Arabidopsis thaliana AT5G67180 I 0.806
AP2 Arabidopsis thaliana AT4G36920 I 0.857
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.802
Bra011741 Brassica rapa Bra011741 I 0.857
Bra011939 Brassica rapa Bra011939 I 0.825
Bra012139 Brassica rapa Bra012139 I 0.800
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.849
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.856
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.846
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.856
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.857
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.806
F775_32962 Aegilops tauschii F775_32962 I 0.847
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.847
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.847
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.821
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.804
Bra017809 Brassica rapa Bra017809 I 0.857
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.849
Si029636m.g Setaria italica Si029636m.g I 0.821
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.844
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.849
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.829
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.857
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.856
OS07G0235800 Oryza sativa OS07G0235800 I 0.823
OS05G0121600 Oryza sativa OS05G0121600 I 0.849
OS03G0818800 Oryza sativa OS03G0818800 I 0.788
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.823
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.835
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.848
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.831
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.848
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.848
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.843
Si025305m.g Setaria italica Si025305m.g I 0.849
Si012635m.g Setaria italica Si012635m.g I 0.848
Si006371m.g Setaria italica Si006371m.g I 0.702
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.811
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.848
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.821
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.820
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.848
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.840
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.848
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.817
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.856
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.823
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.848
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.823
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.835
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.848
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.831
OBART07G08110 Oryza barthii OBART07G08110 I 0.823
OB06G29960 Oryza brachyantha OB06G29960 I 0.835
OB03G45870 Oryza brachyantha OB03G45870 I 0.823
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.829
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.856
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.857
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.824
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.845
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.824
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.823
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.823
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.785
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.833
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.849
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.848
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.831
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.835
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.848
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.831
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.823
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.823
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.835
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.848
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.831
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.802