Lus10009834.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10009834.g T008771_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
abi4
M02648_2.00 		Zea mays
CGSYGCYBYB
VRVRGCRSCG		 SELEX
Mathelier et al.(2014)
MA0123.1 		0.790 0.920
abi4
M09706_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABI4_01 		0.790 0.920
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10009834 AP2 59 110

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_12465 Cicer arietinum Ca_12465 I 0.818
Lus10040944.g Linum usitatissimum Lus10040944.g I 0.818
MDP0000628484 Malus domestica MDP0000628484 I 0.811
cassava20838.m1 Manihot esculenta cassava20838.m1 I 0.811
Cla006708 Citrullus lanatus Cla006708 I 0.811
chr2.CM0002.60.nc Lotus japonicus chr2.CM0002.60.nc I 0.811
GSMUA_Achr5G07400_001 Musa acuminata GSMUA_Achr5G07400_001 I 0.809
MTR_5g082950 Medicago truncatula MTR_5g082950 I 0.808
GSMUA_Achr3G10100_001 Musa acuminata GSMUA_Achr3G10100_001 I 0.806
GSMUA_Achr9G18060_001 Musa acuminata GSMUA_Achr9G18060_001 I 0.806
SapurV1A.0650s0090 Salix purpurea SapurV1A.0650s0090 I 0.803
POPTR_0008s07120 Populus trichocarpa POPTR_0008s07120 I 0.802
PGSC0003DMG400041883 Solanum tuberosum PGSC0003DMG400041883 I 0.802
PGSC0003DMG400034739 Solanum tuberosum PGSC0003DMG400034739 I 0.802
PRUPE_ppa015230mg Prunus persica PRUPE_ppa015230mg I 0.802
Pm018953 Prunus mume Pm018953 I 0.802
TCM_042471 Theobroma cacao TCM_042471 I 0.802
SapurV1A.0061s0480 Salix purpurea SapurV1A.0061s0480 I 0.802
29814.m000739 Ricinus communis 29814.m000739 I 0.802
cassava41265.m1 Manihot esculenta cassava41265.m1 I 0.802
GLYMA14G06290 Glycine max GLYMA14G06290 I 0.802
MDP0000225376 Malus domestica MDP0000225376 I 0.802
gene21003-v1.0-hybrid Fragaria vesca gene21003-v1.0-hybrid I 0.802
Ciclev10033578m.g Citrus clementina Ciclev10033578m.g I 0.802
orange1.1g038194m.g Citrus sinensis orange1.1g038194m.g I 0.802
GLYMA02G43240 Glycine max GLYMA02G43240 I 0.802
mgf024416m Mimulus guttatus mgf024416m I 0.798
POPTR_0010s19370 Populus trichocarpa POPTR_0010s19370 I 0.795
ABI4 Vitis vinifera VIT_13s0067g01400 I 0.792
Pavir.J38620 Panicum virgatum Pavir.J38620 I 0.790
Pavir.J33237 Panicum virgatum Pavir.J33237 I 0.790
Pavir.J29572 Panicum virgatum Pavir.J29572 I 0.790
Sb09g016550 Sorghum bicolor Sb09g016550 I 0.790
BGIOSGA018232 Oryza indica BGIOSGA018232 I 0.790
OGLUM05G13600 Oryza glumaepatula OGLUM05G13600 I 0.790
LPERR05G10140 Leersia perrieri LPERR05G10140 I 0.790
abi4 Zea mays GRMZM2G093595 D 0.790
ONIVA05G13490 Oryza nivara ONIVA05G13490 I 0.790
OMERI05G11540 Oryza meridionalis OMERI05G11540 I 0.790
ABI4 Oryza sativa OS05G0351200 I 0.790
ORGLA05G0109500 Oryza glaberrima ORGLA05G0109500 I 0.790
OPUNC05G11000 Oryza punctata OPUNC05G11000 I 0.790
Bo3g034810 Brassica oleracea Bo3g034810 I 0.788
Bra004978 Brassica rapa Bra004978 I 0.788
Bo4g025410 Brassica oleracea Bo4g025410 I 0.788
Bra000178 Brassica rapa Bra000178 I 0.788
Thhalv10017614m.g Eutrema salsugineum Thhalv10017614m.g I 0.788
ABI4 Arabidopsis thaliana AT2G40220 I 0.786
Cagra.7053s0005 Capsella grandiflora Cagra.7053s0005 I 0.786
Carubv10025253m.g Capsella rubella Carubv10025253m.g I 0.786
ABI4 Arabidopsis lyrata Al_scaffold_0004_2621 I 0.786
Bostr.23794s0036 Boechera stricta Bostr.23794s0036 I 0.786
evm.TU.supercontig_1288.2 Carica papaya evm.TU.supercontig_1288.2 I 0.774
AMTR_s00007p00053050 Amborella trichopoda AMTR_s00007p00053050 I 0.741
Gorai.011G291900 Gossypium raimondii Gorai.011G291900 I 0.740
SELMODRAFT_420500 Selaginella moellendorffii SELMODRAFT_420500 I 0.718
SELMODRAFT_427925 Selaginella moellendorffii SELMODRAFT_427925 I 0.718