Lus10012226.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10012226.g T008785_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.723 0.755
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.711 0.736
Q8H769_WHEAT
M09721_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1_01 		0.709 0.755
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.704 0.717
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.704 0.717
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.704 0.717
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.684 0.717
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10012226 AP2 62 121

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

204 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.753
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.748
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.739
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.739
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.739
Cla006713 Citrullus lanatus Cla006713 I 0.733
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.733
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.732
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.730
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.729
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.729
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.725
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.725
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.725
PK07402.1 Cannabis sativa PK07402.1 D 0.723
SapurV1A.0620s0100 Salix purpurea SapurV1A.0620s0100 I 0.721
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.721
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.720
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.718
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.717
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.715
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.715
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.715
PK07829.1 Cannabis sativa PK07829.1 I 0.715
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.715
Bra003752 Brassica rapa Bra003752 I 0.714
Bo6g086320 Brassica oleracea Bo6g086320 I 0.714
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.713
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.713
GSMUA_Achr5G28050_001 Musa acuminata GSMUA_Achr5G28050_001 I 0.713
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.713
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.712
Pm003634 Prunus mume Pm003634 I 0.712
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.712
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.711
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.711
Bo9g155940 Brassica oleracea Bo9g155940 I 0.711
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.711
Bra002159 Brassica rapa Bra002159 I 0.711
DREB2G Arabidopsis thaliana AT5G18450 D 0.711
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.711
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.710
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.710
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.709
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.709
F775_05774 Aegilops tauschii F775_05774 I 0.709
TRIUR3_17973 Triticum urartu TRIUR3_17973 I 0.709
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.709
Ca_10770 Cicer arietinum Ca_10770 I 0.709
MLOC_66686 Hordeum vulgare MLOC_66686 I 0.709
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D 0.709
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.709
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I 0.709
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I 0.709
GSMUA_Achr6G32780_001 Musa acuminata GSMUA_Achr6G32780_001 I 0.709
POPTR_0016s13380 Populus trichocarpa POPTR_0016s13380 I 0.708
mgf017629m Mimulus guttatus mgf017629m I 0.708
29729.m002292 Ricinus communis 29729.m002292 I 0.706
Bo2g083920 Brassica oleracea Bo2g083920 I 0.706
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.706
Bra008200 Brassica rapa Bra008200 I 0.706
gene01985-v1.0-hybrid Fragaria vesca gene01985-v1.0-hybrid I 0.705
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.705
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.704
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.704
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.704
Bo6g119660 Brassica oleracea Bo6g119660 I 0.704
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.704
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.704
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.704
Bra015840 Brassica rapa Bra015840 I 0.704
DREB2D Arabidopsis thaliana AT1G75490 D 0.704
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.704
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.703
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.703
Lus10002855.g Linum usitatissimum Lus10002855.g N 0.703
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.703
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.703
MDP0000250924 Malus domestica MDP0000250924 I 0.703
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.703
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.702
mgf024545m Mimulus guttatus mgf024545m I 0.702
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.701
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.701
30170.m014115 Ricinus communis 30170.m014115 I 0.701
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.701
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.700
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.699
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.699
MDP0000290585 Malus domestica MDP0000290585 I 0.699
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.699
Cla021113 Citrullus lanatus Cla021113 I 0.699
Pm015262 Prunus mume Pm015262 I 0.699
Pm006274 Prunus mume Pm006274 I 0.699
PRUPE_ppa022733mg Prunus persica PRUPE_ppa022733mg I 0.699
MDP0000141335 Malus domestica MDP0000141335 I 0.697
MDP0000295902 Malus domestica MDP0000295902 I 0.697
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.697
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.697
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.697
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.697
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.697
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.696
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I 0.696
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.696
MDP0000153866 Malus domestica MDP0000153866 I 0.696
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.696
SapurV1A.0001s0300 Salix purpurea SapurV1A.0001s0300 I 0.696
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.695
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.695
Traes_5BL_7F0FD1538 Triticum aestivum Traes_5BL_7F0FD1538 I 0.695
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.694
POPTR_0006s10510 Populus trichocarpa POPTR_0006s10510 I 0.694
MDP0000250927 Malus domestica MDP0000250927 I 0.694
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.694
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.693
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.693
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.693
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.693
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.693
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.693
OB01G13930 Oryza brachyantha OB01G13930 I 0.693
OBART01G04210 Oryza barthii OBART01G04210 I 0.693
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I 0.693
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.693
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.693
DREB2A Oryza sativa OS01G0165000 I 0.693
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.693
MDP0000165880 Malus domestica MDP0000165880 I 0.693
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.692
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.692
Pavir.J37967 Panicum virgatum Pavir.J37967 I 0.692
TCM_034132 Theobroma cacao TCM_034132 I 0.691
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I 0.690
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.690
Si002067m.g Setaria italica Si002067m.g I 0.689
Aquca_013_00679 Aquilegia coerulea Aquca_013_00679 I 0.689
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.687
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.687
MDP0000147009 Malus domestica MDP0000147009 I 0.686
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I 0.686
MDP0000446783 Malus domestica MDP0000446783 I 0.686
Cla012194 Citrullus lanatus Cla012194 I 0.686
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.686
Pm018989 Prunus mume Pm018989 I 0.686
MDP0000880312 Malus domestica MDP0000880312 I 0.685
TCM_024756 Theobroma cacao TCM_024756 I 0.684
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.684
PK08602.1 Cannabis sativa PK08602.1 D 0.684
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.684
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.684
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I 0.683
Sb03g004980 Sorghum bicolor Sb03g004980 I 0.683
MDP0000871361 Malus domestica MDP0000871361 I 0.683
Pm025865 Prunus mume Pm025865 I 0.683
MDP0000703626 Malus domestica MDP0000703626 I 0.683
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.682
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.682
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.681
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.681
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.681
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.681
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.681
Ca_07264 Cicer arietinum Ca_07264 I 0.681
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.681
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.681
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.681
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.681
27810.m000639 Ricinus communis 27810.m000639 I 0.681
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.681
Ca_12446 Cicer arietinum Ca_12446 I 0.681
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.681
Cla022803 Citrullus lanatus Cla022803 I 0.681
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.680
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.680
29820.m001008 Ricinus communis 29820.m001008 I 0.680
GLYMA06G45680 Glycine max GLYMA06G45680 I 0.680
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.680
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.679
Bo2g016490 Brassica oleracea Bo2g016490 I 0.679
Bra023674 Brassica rapa Bra023674 I 0.679
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.678
mgf007881m Mimulus guttatus mgf007881m I 0.678
Cucsa.130200 Cucumis sativus Cucsa.130200 I 0.678
TCM_026121 Theobroma cacao TCM_026121 I 0.678
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.678
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.677
GLYMA14G32210 Glycine max GLYMA14G32210 I 0.677
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.677
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.677
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.677
DREB2E Oryza sativa OS03G0174400 I 0.677
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.677
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.677
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.677
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.677
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.677
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.677
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.677
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.677
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.677
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.677
OBART03G05550 Oryza barthii OBART03G05550 I 0.677
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.677