Lus10015055.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10015055.g T008798_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.826 0.898
P93632_MAIZE
M09712_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.814 0.867
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD

HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.806 0.898
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.801 0.888
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10015055 AP2 188 237
Lus10015055 AP2 280 331

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

238 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.801
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.826
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.806
P93632_MAIZE Zea mays P93632_MAIZE D 0.814
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.827
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.743
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.803
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.820
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.813
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.775
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.820
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.816
29805.m001494 Ricinus communis 29805.m001494 I 0.828
29169.m000017 Ricinus communis 29169.m000017 I 0.816
28752.m000339 Ricinus communis 28752.m000339 I 0.820
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.815
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.819
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.826
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.826
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.806
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.776
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.826
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.776
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.820
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.809
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.804
mgf021945m Mimulus guttatus mgf021945m I 0.815
mgf010466m Mimulus guttatus mgf010466m I 0.792
mgf009315m Mimulus guttatus mgf009315m I 0.826
mgf005133m Mimulus guttatus mgf005133m I 0.792
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.806
Pm030172 Prunus mume Pm030172 I 0.810
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.818
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.818
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.818
TCM_042000 Theobroma cacao TCM_042000 I 0.818
TCM_022077 Theobroma cacao TCM_022077 I 0.821
TCM_000665 Theobroma cacao TCM_000665 I 0.827
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.819
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.779
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.826
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.827
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.820
Si036068m.g Setaria italica Si036068m.g I 0.798
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.683
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.820
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.827
Pm002492 Prunus mume Pm002492 I 0.821
Pm000974 Prunus mume Pm000974 I 0.815
Cla020549 Citrullus lanatus Cla020549 I 0.766
Cla018549 Citrullus lanatus Cla018549 I 0.738
Cla018124 Citrullus lanatus Cla018124 I 0.815
Cla000716 Citrullus lanatus Cla000716 I 0.827
Ca_14618 Cicer arietinum Ca_14618 I 0.808
Ca_12010 Cicer arietinum Ca_12010 I 0.802
Ca_09295 Cicer arietinum Ca_09295 I 0.826
Ca_02499 Cicer arietinum Ca_02499 I 0.820
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.802
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.821
Si029636m.g Setaria italica Si029636m.g I 0.798
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.776
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.820
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.809
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.824
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.798
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.820
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.820
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.808
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.798
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.772
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.820
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.791
MDP0000200319 Malus domestica MDP0000200319 I 0.821
MDP0000181606 Malus domestica MDP0000181606 I 0.815
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.798
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.794
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.815
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.817
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.810
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.820
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.813
PK07183.1 Cannabis sativa PK07183.1 I 0.819
PK02403.1 Cannabis sativa PK02403.1 I 0.827
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.681
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.806
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.785
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.809
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.827
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.821
MDP0000163645 Malus domestica MDP0000163645 I 0.792
MDP0000137561 Malus domestica MDP0000137561 I 0.809
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.778
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.762
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.810
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.777
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.827
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.768
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.799
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.820
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.810
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.783
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.772
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.815
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.791
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.821
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.827
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.818
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.764
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.809
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.845
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.809
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.815
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.797
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.815
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.787
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.807
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.803
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.827
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.827
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.749
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.805
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.827
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.826
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.798
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.821
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.798
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.815
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.781
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.798
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.820
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.814
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.797
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.827
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.827
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.816
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.796
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.756
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.824
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.800
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.783
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.821
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.776
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.825
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.789
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.802
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.803
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.789
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.823
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.792
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.820
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.820
Bo7g118400 Brassica oleracea Bo7g118400 I 0.826
Bo7g064000 Brassica oleracea Bo7g064000 I 0.769
Bo4g070350 Brassica oleracea Bo4g070350 I 0.802
Bo1g004960 Brassica oleracea Bo1g004960 I 0.826
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.802
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.806
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.820
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.820
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.808
TOE3 Arabidopsis thaliana AT5G67180 I 0.776
AP2 Arabidopsis thaliana AT4G36920 I 0.826
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.776
Bra011741 Brassica rapa Bra011741 I 0.826
Bra011939 Brassica rapa Bra011939 I 0.802
Bra012139 Brassica rapa Bra012139 I 0.769
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.820
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.827
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.819
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.827
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.826
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.776
F775_32962 Aegilops tauschii F775_32962 I 0.818
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.819
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.818
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.800
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.783
Bra017809 Brassica rapa Bra017809 I 0.826
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.820
Si025305m.g Setaria italica Si025305m.g I 0.820
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.820
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.802
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.825
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.827
OS07G0235800 Oryza sativa OS07G0235800 I 0.802
OS05G0121600 Oryza sativa OS05G0121600 I 0.820
OS03G0818800 Oryza sativa OS03G0818800 I 0.769
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.802
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.806
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.820
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.808
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.802
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.822
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.821
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.822
Si012635m.g Setaria italica Si012635m.g I 0.820
Si006371m.g Setaria italica Si006371m.g I 0.705
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.814
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.820
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.798
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.798
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.821
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.810
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.821
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.797
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.827
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.815
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.820
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.820
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.802
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.806
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.820
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.808
OBART07G08110 Oryza barthii OBART07G08110 I 0.802
OB06G29960 Oryza brachyantha OB06G29960 I 0.806
OB03G45870 Oryza brachyantha OB03G45870 I 0.800
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.802
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.827
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.826
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.802
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.817
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.801
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.802
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.802
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.756
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.807
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.820
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.820
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.808
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.806
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.820
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.808
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.802
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.802
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.806
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.820
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.808
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.791