Lus10016815.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10016815.g T008813_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF003
M06667_2.00
Arabidopsis thaliana
DYCDCCRCCGYMDHHDYHN

NDRHDDHKRCGGYGGHGRH
Dap-seq
OMalley et al.(2016)
ESE3_col_a
0.851 0.961
ERF003
M06668_2.00
Arabidopsis thaliana
HDYCKCCGCCGYHDH

DHDRCGGCGGMGRHD
Dap-seq
OMalley et al.(2016)
ESE3_colamp_a
0.851 0.961
WIN1
M01603_2.00
Arabidopsis thaliana
VCRCCGCNNN

NNNGCGGYGB
PBM
Weirauch et al.(2014)
pTH7566
0.720 0.804
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10016815 AP2 6 57

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

298 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nLs.2.1.2.g03086 Litomosoides sigmodontis nLs.2.1.2.g03086 I 0.000
six4 Xenopus tropicalis XB-GENE-481699 I 0.000
PXEA_0002133501 Protopolystoma xenopodis PXEA_0002133501 I 0.000
Pvit_17416 Pogona vitticeps Pvit_17416 I 0.000
YQE_03710 Dendroctonus ponderosae YQE_03710 I 0.000
TCLT_0000291601 Thelazia callipaeda TCLT_0000291601 I 0.000
six4b Danio rerio ENSDARG00000031983 I 0.000
ENSAMXG00000019352 Astyanax mexicanus ENSAMXG00000019352 I 0.000
CJA17634 Caenorhabditis japonica CJA17634 I 0.000
PEQ_0000660801 Parascaris equorum PEQ_0000660801 I 0.000
PEQ_0000072101 Parascaris equorum PEQ_0000072101 N 0.000
PEQ_0000211101 Parascaris equorum PEQ_0000211101 N 0.000
snap_masked-nMf.1.1.scaf01656-processed-gene-0.6 Meloidogyne floridensis snap_masked-nMf.1.1.scaf01656-processed-gene-0.6 N 0.000
SVUK_0002108701 Strongylus vulgaris SVUK_0002108701 N 0.000
Bm522 Brugia malayi Bm522 N 0.000
EEL_0000988301 Elaeophora elaphi EEL_0000988301 N 0.000
BTMF_0000534901 Brugia timori BTMF_0000534901 N 0.000
ANCDUO_23484 Ancylostoma duodenale ANCDUO_23484 N 0.000
ANCCEY_01677 Ancylostoma ceylanicum ANCCEY_01677 N 0.000
SNAPOd2T00005340001 Oikopleura dioica SNAPOd2T00005340001 N 0.000
ENSMMUP00000024349 Macaca fascicularis ENSMMUP00000024349 N 0.000
WBGene00242653 Onchocerca volvulus WBGene00242653 N 0.000
HelroG92182 Helobdella robusta HelroG92182 N 0.000
TCNE_0000507501 Toxocara canis TCNE_0000507501 N 0.000