Lus10017829.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10017829.g T008816_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.711 0.745
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.711 0.745
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.711 0.745
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.711 0.745
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.711 0.745
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.711 0.745
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.694 0.725
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.678 0.706
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.678 0.706
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.678 0.706
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.678 0.706
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10017829 AP2 27 79

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.798
Pm023775 Prunus mume Pm023775 I 0.793
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.793
MDP0000154764 Malus domestica MDP0000154764 I 0.793
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.786
MDP0000198054 Malus domestica MDP0000198054 I 0.784
Pm023772 Prunus mume Pm023772 I 0.780
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.777
Pm023769 Prunus mume Pm023769 I 0.771
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.771
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.765
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.762
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.760
Cla011674 Citrullus lanatus Cla011674 I 0.751
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.748
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.748
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.744
Ca_08732 Cicer arietinum Ca_08732 I 0.739
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.739
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.737
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.737
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.734
TCM_016175 Theobroma cacao TCM_016175 I 0.733
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.732
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.732
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.732
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.732
mgf019061m Mimulus guttatus mgf019061m I 0.732
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.732
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.730
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.729
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.728
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.726
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.726
mgf017136m Mimulus guttatus mgf017136m I 0.725
30190.m011120 Ricinus communis 30190.m011120 I 0.721
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.718
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.718
60638.m00016 Ricinus communis 60638.m00016 I 0.718
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.715
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.714
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.711
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.711
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.711
DREB1F Arabidopsis thaliana AT1G12610 D 0.711
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.711
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.708
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.708
Bo8g108050 Brassica oleracea Bo8g108050 I 0.708
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.708
Bra026963 Brassica rapa Bra026963 I 0.708
mgf026642m Mimulus guttatus mgf026642m I 0.708
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.708
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.707
Bra016763 Brassica rapa Bra016763 I 0.707
Bo01335s010 Brassica oleracea Bo01335s010 I 0.707
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.704
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.703
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.703
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.702
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.702
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.701
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.701
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.701
PK23332.1 Cannabis sativa PK23332.1 I 0.701
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.701
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.700
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.700
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.700
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.699
Cla006315 Citrullus lanatus Cla006315 I 0.698
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.698
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.698
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.697
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.694
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.694
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.694
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.690
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.688
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.687
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.686
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.686
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.685
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.685
30147.m014313 Ricinus communis 30147.m014313 I 0.681
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.680
Bo5g016750 Brassica oleracea Bo5g016750 I 0.680
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.679
DREB1A Arabidopsis thaliana AT4G25480 D 0.678
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.678
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.678
30190.m011119 Ricinus communis 30190.m011119 I 0.677