Lus10018124.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10018124.g T008819_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.827 0.929
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD

HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.826 0.959
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.813 0.918
P93632_MAIZE
M09712_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.781 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10018124 AP2 154 203
Lus10018124 AP2 246 297

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

238 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.834
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.834
Si025305m.g Setaria italica Si025305m.g I 0.834
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.834
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.834
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.834
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.834
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.834
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.834
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.834
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.834
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.834
Ca_02499 Cicer arietinum Ca_02499 I 0.834
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.834
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.834
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.834
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.834
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.834
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.834
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.834
OS05G0121600 Oryza sativa OS05G0121600 I 0.834
28752.m000339 Ricinus communis 28752.m000339 I 0.834
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.833
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.833
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.833
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.833
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.833
TCM_022077 Theobroma cacao TCM_022077 I 0.833
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.833
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.833
Pm002492 Prunus mume Pm002492 I 0.833
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.833
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.833
MDP0000200319 Malus domestica MDP0000200319 I 0.833
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.832
PK07183.1 Cannabis sativa PK07183.1 I 0.832
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.831
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.831
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.831
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.830
Pm000974 Prunus mume Pm000974 I 0.830
MDP0000181606 Malus domestica MDP0000181606 I 0.830
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.829
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.829
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.829
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.829
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.829
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.829
TCM_042000 Theobroma cacao TCM_042000 I 0.829
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.829
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.829
F775_32962 Aegilops tauschii F775_32962 I 0.829
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.828
29805.m001494 Ricinus communis 29805.m001494 I 0.828
Cla018124 Citrullus lanatus Cla018124 I 0.828
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.828
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.828
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.827
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.827
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.827
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.827
Bo1g004960 Brassica oleracea Bo1g004960 I 0.827
Bra017809 Brassica rapa Bra017809 I 0.827
Bra011741 Brassica rapa Bra011741 I 0.827
Bo7g118400 Brassica oleracea Bo7g118400 I 0.827
AP2 Arabidopsis thaliana AT4G36920 I 0.827
Ca_09295 Cicer arietinum Ca_09295 I 0.827
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.827
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.827
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.827
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.827
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.826
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.826
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.826
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.826
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.826
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.826
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.826
Cla000716 Citrullus lanatus Cla000716 I 0.826
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.826
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.826
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.826
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.826
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.826
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.826
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.826
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.826
mgf021945m Mimulus guttatus mgf021945m I 0.826
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.826
PK02403.1 Cannabis sativa PK02403.1 I 0.826
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.826
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.826
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.826
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.826
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.825
mgf009315m Mimulus guttatus mgf009315m I 0.825
TCM_000665 Theobroma cacao TCM_000665 I 0.823
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.823
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.823
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.822
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.822
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.820
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.818
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.818
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.818
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.818
Si012635m.g Setaria italica Si012635m.g I 0.818
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.818
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.818
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.818
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.818
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.818
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.818
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.818
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.818
Bra011939 Brassica rapa Bra011939 I 0.817
Bo4g070350 Brassica oleracea Bo4g070350 I 0.817
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.817
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.816
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.816
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.816
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.816
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.816
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.816
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.815
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.815
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.815
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.815
Ca_12010 Cicer arietinum Ca_12010 I 0.815
29169.m000017 Ricinus communis 29169.m000017 I 0.815
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.814
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.813
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.813
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.813
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.813
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.813
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.812
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.812
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.812
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.812
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.812
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.812
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.812
OS07G0235800 Oryza sativa OS07G0235800 I 0.812
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.812
OBART07G08110 Oryza barthii OBART07G08110 I 0.812
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.812
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.812
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.812
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.811
MDP0000137561 Malus domestica MDP0000137561 I 0.811
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.811
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.811
Si036068m.g Setaria italica Si036068m.g I 0.810
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.810
Pm030172 Prunus mume Pm030172 I 0.810
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.810
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.810
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.810
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.810
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.810
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.810
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.810
Ca_14618 Cicer arietinum Ca_14618 I 0.809
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.809
Si029636m.g Setaria italica Si029636m.g I 0.809
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.809
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.809
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.809
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.809
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.808
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.808
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.808
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.808
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.808
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.808
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.808
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.807
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.806
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.806
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.806
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.806
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.805
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.805
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.804
OB06G29960 Oryza brachyantha OB06G29960 I 0.804
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.804
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.804
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.804
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.804
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.804
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.803
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.801
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.801
OB03G45870 Oryza brachyantha OB03G45870 I 0.800
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.797
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.796
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.796
MDP0000163645 Malus domestica MDP0000163645 I 0.795
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.795
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.795
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.793
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.791
mgf005133m Mimulus guttatus mgf005133m I 0.791
mgf010466m Mimulus guttatus mgf010466m I 0.791
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.790
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.787
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.786
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.786
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.783
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.783
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.782
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.782
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.781
P93632_MAIZE Zea mays P93632_MAIZE D 0.781
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.781
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.780
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.779
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.779
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.777
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.776
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.776
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.776
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.776
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.776
TOE3 Arabidopsis thaliana AT5G67180 I 0.776
Cla018549 Citrullus lanatus Cla018549 I 0.774
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.774
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.771
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.771
Cla020549 Citrullus lanatus Cla020549 I 0.771
Bra012139 Brassica rapa Bra012139 I 0.770
Bo7g064000 Brassica oleracea Bo7g064000 I 0.770
OS03G0818800 Oryza sativa OS03G0818800 I 0.767
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.763
Si006371m.g Setaria italica Si006371m.g I 0.695
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.683
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.677