Lus10019455.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10019455.g T008827_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.690 0.900
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.690 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10019455 AP2 54 105

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.755
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.753
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.723
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.721
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.718
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.718
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.718
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.718
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.718
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.714
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.712
mgf018934m Mimulus guttatus mgf018934m I 0.712
mgf018631m Mimulus guttatus mgf018631m I 0.712
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.712
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.712
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.712
mgf022408m Mimulus guttatus mgf022408m I 0.712
mgf016974m Mimulus guttatus mgf016974m I 0.712
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.710
POPTR_0014s05500 Populus trichocarpa POPTR_0014s05500 I 0.709
SapurV1A.0490s0260 Salix purpurea SapurV1A.0490s0260 I 0.709
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.703
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.699
Bo8g050800 Brassica oleracea Bo8g050800 I 0.695
Bra010460 Brassica rapa Bra010460 I 0.695
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.691
Bo9g104770 Brassica oleracea Bo9g104770 I 0.690
DREB1D Arabidopsis thaliana AT5G51990 D 0.690
Bra028290 Brassica rapa Bra028290 I 0.690
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.690
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.690
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.690
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.690
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.690
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.688
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.687
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.687
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.687
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.687
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.686
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.683
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.683
mgf026642m Mimulus guttatus mgf026642m I 0.681
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.681
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.681
Cla006315 Citrullus lanatus Cla006315 I 0.680
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.680
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.679
Cla002362 Citrullus lanatus Cla002362 I 0.677