Lus10021678.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10021678.g T008833_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF118
M01047_2.00
Arabidopsis thaliana
NCGCCGYNN

NNRCGGCGN
PBM
Sullivan et al.(2014)
pTH7330
0.689 0.720
ERF118
M06591_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD

HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
CRF10_col100_a
0.689 0.720
ERF118
M06592_2.00
Arabidopsis thaliana
NGDATCHNDGATTCNNH

DNNGAATCHNDGATHCN
Dap-seq
OMalley et al.(2016)
CRF10_colamp_a
0.689 0.720
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10021678 AP2 108 158

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ERF118 Arabidopsis thaliana AT1G68550 D 0.689
SapurV1A.0079s0190 Salix purpurea SapurV1A.0079s0190 I 0.684
SapurV1A.0078s0470 Salix purpurea SapurV1A.0078s0470 I 0.687
Lus10034316.g Linum usitatissimum Lus10034316.g I 0.721
Gorai.008G183300 Gossypium raimondii Gorai.008G183300 I 0.687
Bostr.26959s0035 Boechera stricta Bostr.26959s0035 I 0.696
cassava43300.valid.m1 Manihot esculenta cassava43300.valid.m1 I 0.695
cassava35758.valid.m1 Manihot esculenta cassava35758.valid.m1 I 0.701
cassava35757.valid.m1 Manihot esculenta cassava35757.valid.m1 I 0.701
27524.m000298 Ricinus communis 27524.m000298 I 0.695
TCM_011811 Theobroma cacao TCM_011811 I 0.687
POPTR_0010s13540 Populus trichocarpa POPTR_0010s13540 I 0.687
POPTR_0008s11900 Populus trichocarpa POPTR_0008s11900 I 0.684
fgenesh2_kg.2__1107__AT1G68550.2 Arabidopsis lyrata fgenesh2_kg.2__1107__AT1G68550.2 I 0.684
Thhalv10019722m.g Eutrema salsugineum Thhalv10019722m.g I 0.719
Lus10035018.g Linum usitatissimum Lus10035018.g N 0.791
Lus10041456.g Linum usitatissimum Lus10041456.g N 0.728