Lus10026477.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10026477.g T008853_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q9XHD4_PETHY
M09737_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2A_01
0.833 0.909
Q9XHD3_PETHY
M09736_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AP2B_01
0.820 0.909
RAP2.7
M00845_2.00
Arabidopsis thaliana
KRCGRGGD

HCCYCGYM
PBM
Franco-Zorrilla et al.(2014)
TOE1
0.816 0.909
P93632_MAIZE
M09712_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GL15_01
0.790 0.838
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10026477 AP2 33 83
Lus10026477 AP2 125 176

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

238 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.868
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.855
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.855
MDP0000200319 Malus domestica MDP0000200319 I 0.841
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.840
28752.m000339 Ricinus communis 28752.m000339 I 0.840
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.840
Ca_02499 Cicer arietinum Ca_02499 I 0.839
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.839
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.839
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.839
TCM_022077 Theobroma cacao TCM_022077 I 0.839
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.839
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.839
PK07183.1 Cannabis sativa PK07183.1 I 0.839
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.839
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.839
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.839
Pm002492 Prunus mume Pm002492 I 0.839
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.839
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.839
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.838
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.838
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.838
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.838
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.838
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.838
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.838
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.838
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.838
OS05G0121600 Oryza sativa OS05G0121600 I 0.838
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.838
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.838
Si025305m.g Setaria italica Si025305m.g I 0.838
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.838
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.838
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.838
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.838
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.838
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.837
29805.m001494 Ricinus communis 29805.m001494 I 0.836
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.836
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.836
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.835
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.835
mgf021945m Mimulus guttatus mgf021945m I 0.835
Cla018124 Citrullus lanatus Cla018124 I 0.835
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.835
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.835
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.835
MDP0000163645 Malus domestica MDP0000163645 I 0.835
MDP0000181606 Malus domestica MDP0000181606 I 0.834
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.834
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.834
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.834
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.834
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.834
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.834
Pm000974 Prunus mume Pm000974 I 0.834
PK02403.1 Cannabis sativa PK02403.1 I 0.834
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.834
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.834
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.834
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.834
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.834
TCM_000665 Theobroma cacao TCM_000665 I 0.834
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.834
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.834
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.834
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.834
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.834
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.834
Cla000716 Citrullus lanatus Cla000716 I 0.834
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.833
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.833
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.833
TCM_042000 Theobroma cacao TCM_042000 I 0.833
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.833
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.833
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.833
Bra011741 Brassica rapa Bra011741 I 0.833
Bra017809 Brassica rapa Bra017809 I 0.833
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.833
Bo7g118400 Brassica oleracea Bo7g118400 I 0.833
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.833
AP2 Arabidopsis thaliana AT4G36920 I 0.833
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.833
Bo1g004960 Brassica oleracea Bo1g004960 I 0.833
F775_32962 Aegilops tauschii F775_32962 I 0.833
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.833
mgf009315m Mimulus guttatus mgf009315m I 0.833
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.833
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.833
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.833
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.833
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.833
Ca_09295 Cicer arietinum Ca_09295 I 0.833
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.833
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.833
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.832
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.832
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.829
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.829
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.828
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.827
Si012635m.g Setaria italica Si012635m.g I 0.827
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.827
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.827
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.827
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.827
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.827
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.827
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.827
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.827
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.826
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.826
29169.m000017 Ricinus communis 29169.m000017 I 0.824
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.824
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.823
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.823
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.823
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.823
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.821
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.821
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.821
Ca_12010 Cicer arietinum Ca_12010 I 0.821
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.821
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.821
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.820
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.820
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.820
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.820
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.820
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.819
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.819
OS07G0235800 Oryza sativa OS07G0235800 I 0.819
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.819
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.819
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.819
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.819
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.819
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.819
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.819
OBART07G08110 Oryza barthii OBART07G08110 I 0.819
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.819
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.819
Si029636m.g Setaria italica Si029636m.g I 0.819
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.819
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.818
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.818
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.818
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.818
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.818
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.818
Pm030172 Prunus mume Pm030172 I 0.818
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.818
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.817
MDP0000137561 Malus domestica MDP0000137561 I 0.817
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.817
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.816
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.816
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.816
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.816
Bo4g070350 Brassica oleracea Bo4g070350 I 0.816
Bra011939 Brassica rapa Bra011939 I 0.816
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.816
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.816
Si036068m.g Setaria italica Si036068m.g I 0.814
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.814
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.814
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.814
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.814
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.814
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.814
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.813
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.813
Ca_14618 Cicer arietinum Ca_14618 I 0.813
OB06G29960 Oryza brachyantha OB06G29960 I 0.813
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.813
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.813
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.813
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.813
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.812
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.812
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.812
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.812
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.812
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.812
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.811
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.811
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.810
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.809
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.809
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.808
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.807
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.806
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.805
OB03G45870 Oryza brachyantha OB03G45870 I 0.804
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.802
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.799
mgf005133m Mimulus guttatus mgf005133m I 0.799
mgf010466m Mimulus guttatus mgf010466m I 0.799
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.798
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.798
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.797
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.797
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.795
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.795
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.794
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.793
P93632_MAIZE Zea mays P93632_MAIZE D 0.790
Cla018549 Citrullus lanatus Cla018549 I 0.790
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.790
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.789
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.786
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.786
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.785
TOE3 Arabidopsis thaliana AT5G67180 I 0.784
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.784
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.784
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.783
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.783
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.783
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.783
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.782
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.780
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.779
Cla020549 Citrullus lanatus Cla020549 I 0.779
Bra012139 Brassica rapa Bra012139 I 0.777
Bo7g064000 Brassica oleracea Bo7g064000 I 0.777
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.775
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.775
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.774
OS03G0818800 Oryza sativa OS03G0818800 I 0.771
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.768
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.706
Si006371m.g Setaria italica Si006371m.g I 0.697
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.685