Lus10029987.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10029987.g T008871_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF3
M01607_2.00
Arabidopsis thaliana
CGCCGSCR

YGSCGGCG
PBM
Weirauch et al.(2014)
pTH8109
0.716 0.830
ERF3
M06584_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD

HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
ERF3_col_a
0.716 0.830
ERF3
M06585_2.00
Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR

YGRCGGCGGHRNNDNHDDNN
Dap-seq
OMalley et al.(2016)
ERF3_colamp_a
0.716 0.830
PK17878.1
M01099_2.00
Cannabis sativa
CGCCGYCR

YGRCGGCG
PBM
Lambert et al.(2019)
pTH10133
0.706 0.809
ERF7
M01617_2.00
Arabidopsis thaliana
NGCCGNMNNN

NNNKNCGGCN
PBM
Weirauch et al.(2014)
pTH7606
0.703 0.745
ERF7
M06620_2.00
Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD

HGRCGGCGGHGRHRRNRDNDR
Dap-seq
OMalley et al.(2016)
ERF7_col_a
0.703 0.745
ERF7
M06621_2.00
Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH

DYGGCGGCGSHDDNDNNDNNN
Dap-seq
OMalley et al.(2016)
ERF7_colamp_a
0.703 0.745
ERF4
M01616_2.00
Arabidopsis thaliana
VCGCCGCC

GGCGGCGB
PBM
Weirauch et al.(2014)
pTH8156
0.692 0.766
ERF4
M06616_2.00
Arabidopsis thaliana
YCDCCGCCGCCRHHD

HDDYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF4_col_a
0.692 0.766
ERF4
M06617_2.00
Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN

NNHDDYGRCGGCGSNDNNDN
Dap-seq
OMalley et al.(2016)
ERF4_colamp_a
0.692 0.766
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN

NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.680 0.766
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN

NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.680 0.766
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10029987 AP2 25 76

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

286 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL003978 Aedes aegypti AAEL003978 I 0.000
AALB005349 Anopheles albimanus AALB005349 I 0.000
AATE004981 Anopheles atroparvus AATE004981 I 0.000
ACEP27778 Atta cephalotes ACEP27778 I 0.000
ACOM027947 Anopheles coluzzii ACOM027947 I 0.000
ACUA018690 Anopheles culicifacies ACUA018690 I 0.000
ACYPI001198 Acyrthosiphon pisum ACYPI001198 I 0.000
ADAC007927 Anopheles darlingi ADAC007927 I 0.000
AFAF000519 Anopheles farauti AFAF000519 I 0.000
AFUN000435 Anopheles funestus AFUN000435 I 0.000
AGAP005390 Anopheles gambiae AGAP005390 I 0.000
AMAM014424 Anopheles maculatus AMAM014424 I 0.000
AMEC006310 Anopheles melas AMEC006310 I 0.000
AMEM010751 Anopheles merus AMEM010751 I 0.000
AMIN007420 Anopheles minimus AMIN007420 I 0.000
AQUA007695 Anopheles quadriannulatus AQUA007695 I 0.000
BGLB003738 Biomphalaria glabrata BGLB003738 I 0.000
CapteG19364 Capitella teleta CapteG19364 I 0.000
CGI_10005451 Crassostrea gigas CGI_10005451 I 0.000
CPIJ005455 Culex quinquefasciatus CPIJ005455 I 0.000
CpipJ_CPIJ005455 Culex pipiens CpipJ_CPIJ005455 I 0.000
DAPPUDRAFT_53927 Daphnia pulex DAPPUDRAFT_53927 I 0.000
e_gw.6.95.1 Branchiostoma floridae e_gw.6.95.1 I 0.000
GA14370 Drosophila pseudoobscura FBgn0074398 I 0.000
GB42492 Apis mellifera GB42492 I 0.000
GE21016 Drosophila yakuba FBgn0238298 I 0.000
GF25038 Drosophila ananassae FBgn0102030 I 0.000
GG14656 Drosophila erecta FBgn0106912 I 0.000
GH15211 Drosophila grimshawi FBgn0122686 I 0.000
GI16731 Drosophila mojavensis FBgn0139479 I 0.000
GJ12475 Drosophila virilis FBgn0199717 I 0.000
GK17557 Drosophila willistoni FBgn0219556 I 0.000
GM14272 Drosophila sechellia FBgn0169198 I 0.000
Kah Drosophila melanogaster FBgn0035144 D 0.000
L798_08219 Zootermopsis nevadensis L798_08219 I 0.000
LCUP006416 Lucilia cuprina LCUP006416 I 0.000
LDEC013204 Leptinotarsa decemlineata LDEC013204 I 0.000
LLOJ001905 Lutzomyia longipalpis LLOJ001905 I 0.000
MDOA000347 Musca domestica MDOA000347 I 0.000
NV16451 Nasonia vitripennis NV16451 I 0.000
Ocbimv22026834m.g Octopus bimaculoides Ocbimv22026834m.g I 0.000
PHUM530390 Pediculus humanus PHUM530390 I 0.000
RPRC007744 Rhodnius prolixus RPRC007744 N 0.000
SINV14822 Solenopsis invicta SINV14822 I 0.000
SPU_015640 Strongylocentrotus purpuratus SPU_015640 I 0.000
tetur14g01820 Tetranychus urticae tetur14g01820 I 0.000
YQE_07798 Dendroctonus ponderosae YQE_07798 I 0.000