Lus10033420.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10033420.g T008888_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF018
M00842_2.00 		Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD		 PBM
Franco-Zorrilla et al.(2014)
ORA47 		0.788 0.860
ERF018
M01610_2.00 		Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN		 PBM
Weirauch et al.(2014)
pTH7215 		0.788 0.860
ERF017
M06568_2.00 		Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN		 Dap-seq
OMalley et al.(2016)
At1g19210_col_a 		0.784 0.880
ERF017
M06569_2.00 		Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN		 Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a 		0.784 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10033420 AP2 25 76

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

150 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10034885.g Linum usitatissimum Lus10034885.g I 0.825
mgf021940m Mimulus guttatus mgf021940m I 0.810
29739.m003716 Ricinus communis 29739.m003716 I 0.806
Pm027117 Prunus mume Pm027117 I 0.806
Lus10009798.g Linum usitatissimum Lus10009798.g I 0.806
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I 0.806
Lus10038082.g Linum usitatissimum Lus10038082.g I 0.806
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I 0.805
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I 0.805
Cla007584 Citrullus lanatus Cla007584 I 0.804
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I 0.799
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I 0.799
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I 0.797
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.796
Bra016518 Brassica rapa Bra016518 I 0.796
MDP0000649022 Malus domestica MDP0000649022 I 0.796
Bo8g068370 Brassica oleracea Bo8g068370 I 0.796
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I 0.796
TCM_037415 Theobroma cacao TCM_037415 I 0.795
Bra031069 Brassica rapa Bra031069 I 0.795
Bo8g102870 Brassica oleracea Bo8g102870 I 0.795
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.794
Bra015882 Brassica rapa Bra015882 I 0.794
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.794
mgf024162m Mimulus guttatus mgf024162m I 0.792
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.792
Gorai.004G285900 Gossypium raimondii Gorai.004G285900 I 0.792
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I 0.789
29739.m003647 Ricinus communis 29739.m003647 I 0.789
mgf025452m Mimulus guttatus mgf025452m I 0.789
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.788
ERF018 Arabidopsis thaliana AT1G74930 D 0.788
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.788
TCM_037486 Theobroma cacao TCM_037486 I 0.787
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.785
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.785
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.785
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.785
Bo6g119120 Brassica oleracea Bo6g119120 I 0.784
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.784
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.784
ERF017 Arabidopsis thaliana AT1G19210 D 0.784
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.784
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.783
MDP0000704216 Malus domestica MDP0000704216 I 0.783
Thhalv10019652m.g Eutrema salsugineum Thhalv10019652m.g I 0.783
cassava10604.m1 Manihot esculenta cassava10604.m1 I 0.782
Ciclev10010348m.g Citrus clementina Ciclev10010348m.g I 0.781
Bra003780 Brassica rapa Bra003780 I 0.781
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.780
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.780
Bo6g086740 Brassica oleracea Bo6g086740 I 0.780
Cucsa.271180 Cucumis sativus Cucsa.271180 I 0.780
AMTR_s00007p00268280 Amborella trichopoda AMTR_s00007p00268280 I 0.777
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I 0.777
Si019636m.g Setaria italica Si019636m.g I 0.776
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.776
Ca_01683 Cicer arietinum Ca_01683 I 0.775
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I 0.775
Ciclev10009540m.g Citrus clementina Ciclev10009540m.g I 0.775
MTR_1g014800 Medicago truncatula MTR_1g014800 I 0.775
GLYMA09G08330 Glycine max GLYMA09G08330 I 0.775
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I 0.775
Cla011318 Citrullus lanatus Cla011318 I 0.774
Cucsa.141980 Cucumis sativus Cucsa.141980 I 0.774
GLYMA06G06101 Glycine max GLYMA06G06101 I 0.773
cassava20547.m1 Manihot esculenta cassava20547.m1 I 0.773
GLYMA04G06095 Glycine max GLYMA04G06095 I 0.773
Gorai.001G016800 Gossypium raimondii Gorai.001G016800 I 0.772
GLYMA15G19910 Glycine max GLYMA15G19910 I 0.772
Ca_09124 Cicer arietinum Ca_09124 I 0.772
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I 0.769
MTR_2g043050 Medicago truncatula MTR_2g043050 I 0.768
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.768
ERF016 Arabidopsis thaliana AT5G21960 I 0.767
Gorai.013G222700 Gossypium raimondii Gorai.013G222700 I 0.767
MTR_1g014820 Medicago truncatula MTR_1g014820 I 0.767
MTR_1g014860 Medicago truncatula MTR_1g014860 I 0.767
Thhalv10015465m.g Eutrema salsugineum Thhalv10015465m.g I 0.767
Cucsa.055920 Cucumis sativus Cucsa.055920 I 0.766
Cla022291 Citrullus lanatus Cla022291 I 0.766
GLYMA17G05240 Glycine max GLYMA17G05240 I 0.766
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.765
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.765
GLYMA13G17250 Glycine max GLYMA13G17250 I 0.764
Solyc12g009240.1 Solanum lycopersicum Solyc12g009240.1 I 0.762
PGSC0003DMG400002899 Solanum tuberosum PGSC0003DMG400002899 I 0.762
chr5.CM0040.40.nd Lotus japonicus chr5.CM0040.40.nd I 0.762
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.761
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I 0.760
Bostr.26527s0082 Boechera stricta Bostr.26527s0082 I 0.759
Bo9g149820 Brassica oleracea Bo9g149820 I 0.759
scaffold_602234.1 Arabidopsis lyrata scaffold_602234.1 I 0.759
Bra025719 Brassica rapa Bra025719 I 0.759
Bra002377 Brassica rapa Bra002377 I 0.759
Carubv10001903m.g Capsella rubella Carubv10001903m.g I 0.759
Ca_19295 Cicer arietinum Ca_19295 I 0.756
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.755
MTR_2g043030 Medicago truncatula MTR_2g043030 I 0.754
MTR_2g043040 Medicago truncatula MTR_2g043040 I 0.754
GLYMA17G33535 Glycine max GLYMA17G33535 I 0.753
Ca_19297 Cicer arietinum Ca_19297 I 0.753
Bo3g015600 Brassica oleracea Bo3g015600 I 0.751
Bra006599 Brassica rapa Bra006599 I 0.751
Ca_19296 Cicer arietinum Ca_19296 I 0.751
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.750
Bra020162 Brassica rapa Bra020162 I 0.748
GLYMA14G12505 Glycine max GLYMA14G12505 I 0.744
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.741
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.741
chr1.CM0133.1010.nc Lotus japonicus chr1.CM0133.1010.nc I 0.740
ORUFI02G36340 Oryza rufipogon ORUFI02G36340 I 0.739
OS02G0781300 Oryza sativa OS02G0781300 I 0.739
Bo2g023630 Brassica oleracea Bo2g023630 I 0.739
BGIOSGA005486 Oryza indica BGIOSGA005486 I 0.739
OMERI01G37050 Oryza meridionalis OMERI01G37050 I 0.739
OGLUM02G35980 Oryza glumaepatula OGLUM02G35980 I 0.739
OPUNC02G32160 Oryza punctata OPUNC02G32160 I 0.739
ORGLA02G0301600 Oryza glaberrima ORGLA02G0301600 I 0.739
ONIVA02G36910 Oryza nivara ONIVA02G36910 I 0.739
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.736
GSMUA_Achr5G05160_001 Musa acuminata GSMUA_Achr5G05160_001 I 0.733
chr6.CM0420.30.nd Lotus japonicus chr6.CM0420.30.nd I 0.730
PK18548.1 Cannabis sativa PK18548.1 I 0.730
Si008104m.g Setaria italica Si008104m.g I 0.728
MTR_2g043020 Medicago truncatula MTR_2g043020 I 0.723
Gorai.004G285200 Gossypium raimondii Gorai.004G285200 I 0.719
Traes_6AL_E6DAE246D Triticum aestivum Traes_6AL_E6DAE246D I 0.715
GSMUA_AchrUn_randomG02200_001 Musa acuminata GSMUA_AchrUn_randomG02200_001 I 0.713
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I 0.708
MTR_1g014780 Medicago truncatula MTR_1g014780 I 0.701
OBART08G16950 Oryza barthii OBART08G16950 I 0.693
OB08G24280 Oryza brachyantha OB08G24280 I 0.693
BGIOSGA028781 Oryza indica BGIOSGA028781 I 0.693
GRMZM2G163745 Zea mays GRMZM2G163745 I 0.693
LPERR08G14000 Leersia perrieri LPERR08G14000 I 0.693
Pavir.Fb01602 Panicum virgatum Pavir.Fb01602 I 0.693
Pavir.Fa00741 Panicum virgatum Pavir.Fa00741 I 0.693
Si015027m.g Setaria italica Si015027m.g I 0.693
ORUFI08G18850 Oryza rufipogon ORUFI08G18850 I 0.693
OS08G0454000 Oryza sativa OS08G0454000 I 0.693
OPUNC08G14840 Oryza punctata OPUNC08G14840 I 0.693
ONIVA08G18470 Oryza nivara ONIVA08G18470 I 0.693
OGLUM08G17690 Oryza glumaepatula OGLUM08G17690 I 0.693
Aquca_076_00040 Aquilegia coerulea Aquca_076_00040 I 0.692
AMTR_s00007p00268460 Amborella trichopoda AMTR_s00007p00268460 I 0.687
TRAES3BF084200010CFD_g Triticum aestivum TRAES3BF084200010CFD_g I 0.686
F775_23111 Aegilops tauschii F775_23111 I 0.684
BRADI3G37544 Brachypodium distachyon BRADI3G37544 I 0.684
Sb07g022265 Sorghum bicolor Sb07g022265 I 0.679