Lus10033963.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10033963.g T008894_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q84J59_MAIZE
M09717_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BD1_01
0.847 0.980
ERF086
M06663_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYHD

HDRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
PUCHI_col_a
0.843 0.959
ERF086
M06664_2.00
Arabidopsis thaliana
NNNNHDHCKCCGCCGYHDHHDHNNN

NNNDHDDHDRCGGCGGMGDHDNNNN
Dap-seq
OMalley et al.(2016)
PUCHI_colamp_a
0.843 0.959
LEP
M06661_2.00
Arabidopsis thaliana
NBCKCCGCCGYHDHHDYHNHH

DDNDRHDDHDRCGGCGGMGVN
Dap-seq
OMalley et al.(2016)
LEP_col_a
0.827 0.939
ERF087
M06573_2.00
Arabidopsis thaliana
HHDYCKCCGCCGYYD

HRRCGGCGGMGRHDD
Dap-seq
OMalley et al.(2016)
AT1G28160_col_a
0.760 0.796
ERF087
M06574_2.00
Arabidopsis thaliana
HDYCKCCGCCGYCR

YGRCGGCGGMGRHD
Dap-seq
OMalley et al.(2016)
AT1G28160_colamp_a
0.760 0.796
ERF096
M01630_2.00
Arabidopsis thaliana
NVGCCGNCNN

NNGNCGGCBN
PBM
Weirauch et al.(2014)
pTH7909
0.731 0.714
Q5Y836_TOBAC
M09732_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF5_02
0.726 0.714
ERF10
M06562_2.00
Arabidopsis thaliana
NNHNNHNHHDYCGCCGCCRYN

NRYGGCGGCGRHDDNDNNDNN
Dap-seq
OMalley et al.(2016)
ERF10_col_a
0.714 0.673
ERF10
M06563_2.00
Arabidopsis thaliana
HDSCGCCGCCRHHDNNNNNN

NNNNNNHDDYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF10_colamp_a
0.714 0.673
ERF4
M01616_2.00
Arabidopsis thaliana
VCGCCGCC

GGCGGCGB
PBM
Weirauch et al.(2014)
pTH8156
0.711 0.694
ERF4
M06616_2.00
Arabidopsis thaliana
YCDCCGCCGCCRHHD

HDDYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF4_col_a
0.711 0.694
ERF4
M06617_2.00
Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN

NNHDDYGRCGGCGSNDNNDN
Dap-seq
OMalley et al.(2016)
ERF4_colamp_a
0.711 0.694
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN

NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.707 0.714
PK19363.1
M01100_2.00
Cannabis sativa
NMGCCGHMNN

NNKDCGGCKN
PBM
Lambert et al.(2019)
pTH10138
0.697 0.694
PK19363.1
M01643_2.00
Cannabis sativa
CGCCGYCD

HGRCGGCG
PBM
Weirauch et al.(2014)
pTH9609
0.697 0.694
ERF9
M06670_2.00
Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN

NDRHDRHDDHGRCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ERF9_col_a
0.696 0.694
ERF9
M06671_2.00
Arabidopsis thaliana
NNHDSCGCCGYCRHWDN

NHWDYGRCGGCGSHDNN
Dap-seq
OMalley et al.(2016)
ERF9_colamp_a
0.696 0.694
ERF4_TOBAC
M09728_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_02
0.696 0.673
ERF1B
M01619_2.00
Arabidopsis thaliana
NMGCCGCCRN

NYGGCGGCKN
PBM
Weirauch et al.(2014)
pTH8795
0.695 0.653
ERF1B
M06626_2.00
Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN

NNNNNNNHDNHDRYGGCGGCKRHDNNDN
Dap-seq
OMalley et al.(2016)
ERF1_col_a
0.695 0.653
ERF1B
M06627_2.00
Arabidopsis thaliana
MGCCGCCD

HGGCGGCK
Dap-seq
OMalley et al.(2016)
ERF1_colamp_a
0.695 0.653
ERF1B
M09703_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2_01
0.695 0.653
ERF1B
M09704_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF1_Q2
0.695 0.653
ERF105
M01632_2.00
Arabidopsis thaliana
CGCCGGCM

KGCCGGCG
PBM
Weirauch et al.(2014)
pTH7233
0.687 0.633
ERF105
M06676_2.00
Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR

YGGCGGCGVHDNNDNNNNNNNNDN
Dap-seq
OMalley et al.(2016)
ERF105_colamp_a
0.687 0.633
ERF105
M06677_2.00
Arabidopsis thaliana
HDSCGCCGCCRYHDH

DHDRYGGCGGCGSHD
Dap-seq
OMalley et al.(2016)
ERF105_col
0.687 0.633
ERF11
M01606_2.00
Arabidopsis thaliana
NHGCCGNHNN

NNDNCGGCDN
PBM
Weirauch et al.(2014)
pTH8117
0.684 0.633
ERF11
M06575_2.00
Arabidopsis thaliana
NHNNHDSCGCCGYCRHHNNN

NNNDDYGRCGGCGSHDNNDN
Dap-seq
OMalley et al.(2016)
ERF11_colamp_a
0.684 0.633
ERF11
M06576_2.00
Arabidopsis thaliana
NHNYCKCCGCCGYHD

HDRCGGCGGMGRNDN
Dap-seq
OMalley et al.(2016)
ERF11_col_b
0.684 0.633
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN

NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.684 0.694
CRF3
M01633_2.00
Arabidopsis thaliana
NNGCCRNNN

NNNYGGCNN
PBM
Weirauch et al.(2014)
pTH8110
0.684 0.592
ERF8
M01608_2.00
Arabidopsis thaliana
MGCCGNMNNN

NNNKNCGGCK
PBM
Weirauch et al.(2014)
pTH8095
0.683 0.694
ERF8
M06586_2.00
Arabidopsis thaliana
NYHDYCKCCGCCGYH

DRCGGCGGMGRHDRN
Dap-seq
OMalley et al.(2016)
ERF8_col_a
0.683 0.694
ERF8
M06587_2.00
Arabidopsis thaliana
HNNHDSCGCCGYCRHHDN

NHDDYGRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
ERF8_colamp_a
0.683 0.694
O65242_TOBAC
M09730_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TSI1_01
0.681 0.633
LOC_Os08g36920
M01634_2.00
Oryza sativa
NNNGSCGHNN

NNDCGSCNNN
PBM
Weirauch et al.(2014)
pTH8596
0.677 0.633
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10033963 AP2 56 106

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

1247 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ANCCEY_00370 Ancylostoma ceylanicum ANCCEY_00370 I 0.000
ENSACAG00000003701 Anolis carolinensis ENSACAG00000003701 I 0.000
AGAP001291 Anopheles gambiae AGAP001291 I 0.000
GB54250 Apis mellifera GB54250 I 0.000
ENSAMXG00000012318 Astyanax mexicanus ENSAMXG00000012318 I 0.000
ENSAMXG00000000658 Astyanax mexicanus ENSAMXG00000000658 I 0.000
CJA16978 Caenorhabditis japonica CJA16978 I 0.000
Cmyd_10016551 Chelonia mydas Cmyd_10016551 I 0.000
ENSCING00000022318 Ciona intestinalis ENSCING00000022318 N 0.000
ENSCING00000021681 Ciona intestinalis ENSCING00000021681 N 0.000
macho1 Ciona intestinalis ENSCING00000007968 I 0.000
ENSCING00000002517 Ciona intestinalis ENSCING00000002517 N 0.000
ENSCING00000000012 Ciona intestinalis ENSCING00000000012 N 0.000
ENSCING00000000010 Ciona intestinalis ENSCING00000000010 N 0.000
ENSCSAVG00000002465 Ciona savignyi ENSCSAVG00000002465 N 0.000
ENSCSAVG00000002459 Ciona savignyi ENSCSAVG00000002459 N 0.000
ENSCSAVG00000002454 Ciona savignyi ENSCSAVG00000002454 N 0.000
ENSCSAVG00000002450 Ciona savignyi ENSCSAVG00000002450 N 0.000
ENSCSAVG00000002442 Ciona savignyi ENSCSAVG00000002442 N 0.000
ENSCSAVG00000001907 Ciona savignyi ENSCSAVG00000001907 I 0.000
csin109208 Clonorchis sinensis csin109208 I 0.000
CGI_10016115 Crassostrea gigas CGI_10016115 I 0.000
KGM_22387 Danaus plexippus KGM_22387 I 0.000
zic6 Danio rerio ENSDARG00000071496 I 0.000
DAPPUDRAFT_290567 Daphnia pulex DAPPUDRAFT_290567 I 0.000
ENSDORG00000012706 Dipodomys ordii ENSDORG00000012706 I 0.000
GF18915 Drosophila ananassae FBgn0095929 I 0.000
GG12590 Drosophila erecta FBgn0104878 I 0.000
GH23039 Drosophila grimshawi FBgn0130496 I 0.000
opa Drosophila melanogaster FBgn0003002 D 0.000
GI10245 Drosophila mojavensis FBgn0133010 I 0.000
GL21621 Drosophila persimilis FBgn0159214 I 0.000
GA10924 Drosophila pseudoobscura FBgn0070980 I 0.000
GM10780 Drosophila sechellia FBgn0165726 I 0.000
GD19752 Drosophila simulans FBgn0191241 I 0.000
GJ11051 Drosophila virilis FBgn0198317 I 0.000
GK13239 Drosophila willistoni FBgn0215248 I 0.000
ENSGMOG00000004419 Gadus morhua ENSGMOG00000004419 I 0.000
HelroG77001 Helobdella robusta HelroG77001 N 0.000
XP_002153782.1 Hydra magnipapillata XP_002153782.1 I 0.000
XP_002159358.1 Hydra magnipapillata XP_002159358.1 I 0.000
nLs.2.1.2.g02824 Litomosoides sigmodontis nLs.2.1.2.g02824 I 0.000
ENSMMUP00000019456 Macaca fascicularis ENSMMUP00000019456 I 0.000
ZIC1 Monodelphis domestica ENSMODG00000021251 I 0.000
MDOA000052 Musca domestica MDOA000052 I 0.000
NV11451 Nasonia vitripennis NV11451 I 0.000
NEMVEDRAFT_v1g121215 Nematostella vectensis NEMVEDRAFT_v1g121215 I 0.000
NEMVEDRAFT_v1g25267 Nematostella vectensis NEMVEDRAFT_v1g25267 I 0.000
ZIC5 Ochotona princeps ENSOPRG00000007526 I 0.000
SNAPOd2T00002718001 Oikopleura dioica SNAPOd2T00002718001 I 0.000
WBGene00239980 Onchocerca volvulus WBGene00239980 I 0.000
Ogr17257 Ophisaurus gracilis Ogr17257 I 0.000
T265_00048 Opisthorchis viverrini T265_00048 I 0.000
ENSONIG00000002719 Oreochromis niloticus ENSONIG00000002719 I 0.000
ENSOANG00000012152 Ornithorhynchus anatinus ENSOANG00000012152 I 0.000
ZIC5 Oryctolagus cuniculus ENSOCUG00000026498 I 0.000
PTRK_0000799900 Parastrongyloides trichosuri PTRK_0000799900 I 0.000
ENSPFOG00000012980 Poecilia formosa ENSPFOG00000012980 I 0.000
Pvit_01334 Pogona vitticeps Pvit_01334 I 0.000
ENSPPYG00000005471 Pongo abelii ENSPPYG00000005471 I 0.000
RSKR_0001155900 Rhabditophanes kr3021 RSKR_0001155900 I 0.000
nRc.2.0.1.g22468 Romanomermis culicivorax nRc.2.0.1.g22468 I 0.000
Sakowv30026420m.g Saccoglossus kowalevskii Sakowv30026420m.g I 0.000
ENSSHAG00000015025 Sarcophilus harrisii ENSSHAG00000015025 I 0.000
SMU15033928 Schmidtea mediterranea SMU15033928 I 0.000
SMU15031708 Schmidtea mediterranea SMU15031708 I 0.000
SPAL_0001746600 Strongyloides papillosus SPAL_0001746600 I 0.000
SSTP_0000201100 Strongyloides stercoralis SSTP_0000201100 I 0.000
SVE_0347600 Strongyloides venezuelensis SVE_0347600 I 0.000
ZIC5 Sus scrofa ENSSSCG00000009521 I 0.000
tetur11g00650 Tetranychus urticae tetur11g00650 I 0.000
TCLT_0000586501 Thelazia callipaeda TCLT_0000586501 I 0.000
TC010234 Tribolium castaneum TC010234 I 0.000
TMUE_s0101002100 Trichuris muris TMUE_s0101002100 I 0.000