Lus10038082.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10038082.g T008914_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF017
M06568_2.00 		Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN		 Dap-seq
OMalley et al.(2016)
At1g19210_col_a 		0.803 0.940
ERF017
M06569_2.00 		Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN		 Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a 		0.803 0.940
ERF018
M00842_2.00 		Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD		 PBM
Franco-Zorrilla et al.(2014)
ORA47 		0.784 0.880
ERF018
M01610_2.00 		Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN		 PBM
Weirauch et al.(2014)
pTH7215 		0.784 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10038082 AP2 34 85

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

151 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10009798.g Linum usitatissimum Lus10009798.g I 0.826
Bra016518 Brassica rapa Bra016518 I 0.816
Bo8g068370 Brassica oleracea Bo8g068370 I 0.816
TCM_037415 Theobroma cacao TCM_037415 I 0.815
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.814
Gorai.004G285900 Gossypium raimondii Gorai.004G285900 I 0.811
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I 0.808
29739.m003647 Ricinus communis 29739.m003647 I 0.808
Lus10034885.g Linum usitatissimum Lus10034885.g I 0.806
Lus10033420.g Linum usitatissimum Lus10033420.g I 0.806
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.805
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.805
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.805
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.804
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.803
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.803
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.803
ERF017 Arabidopsis thaliana AT1G19210 D 0.803
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I 0.802
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.802
29739.m003716 Ricinus communis 29739.m003716 I 0.802
Pm027117 Prunus mume Pm027117 I 0.802
cassava10604.m1 Manihot esculenta cassava10604.m1 I 0.801
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I 0.801
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I 0.801
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I 0.796
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I 0.795
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I 0.795
MTR_1g014800 Medicago truncatula MTR_1g014800 I 0.794
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I 0.794
Ca_01683 Cicer arietinum Ca_01683 I 0.794
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I 0.793
GLYMA04G06095 Glycine max GLYMA04G06095 I 0.793
GLYMA06G06101 Glycine max GLYMA06G06101 I 0.793
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I 0.792
mgf021940m Mimulus guttatus mgf021940m I 0.792
MDP0000649022 Malus domestica MDP0000649022 I 0.792
cassava20547.m1 Manihot esculenta cassava20547.m1 I 0.792
Bo8g102870 Brassica oleracea Bo8g102870 I 0.791
Bra031069 Brassica rapa Bra031069 I 0.791
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.791
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.790
mgf024162m Mimulus guttatus mgf024162m I 0.788
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I 0.788
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.788
MTR_1g014820 Medicago truncatula MTR_1g014820 I 0.786
MTR_1g014860 Medicago truncatula MTR_1g014860 I 0.786
Cla007584 Citrullus lanatus Cla007584 I 0.785
ERF018 Arabidopsis thaliana AT1G74930 D 0.784
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.784
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.784
chr5.CM0040.40.nd Lotus japonicus chr5.CM0040.40.nd I 0.782
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.782
TCM_037486 Theobroma cacao TCM_037486 I 0.782
Si019636m.g Setaria italica Si019636m.g I 0.782
Bo6g119120 Brassica oleracea Bo6g119120 I 0.781
MDP0000704216 Malus domestica MDP0000704216 I 0.780
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I 0.779
Bra002377 Brassica rapa Bra002377 I 0.778
Bostr.26527s0082 Boechera stricta Bostr.26527s0082 I 0.778
Carubv10001903m.g Capsella rubella Carubv10001903m.g I 0.778
scaffold_602234.1 Arabidopsis lyrata scaffold_602234.1 I 0.778
Bo9g149820 Brassica oleracea Bo9g149820 I 0.778
Bra003780 Brassica rapa Bra003780 I 0.777
Ciclev10010348m.g Citrus clementina Ciclev10010348m.g I 0.777
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.776
Bra015882 Brassica rapa Bra015882 I 0.776
Bo6g086740 Brassica oleracea Bo6g086740 I 0.776
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.776
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.774
AMTR_s00007p00268280 Amborella trichopoda AMTR_s00007p00268280 I 0.774
ERF016 Arabidopsis thaliana AT5G21960 I 0.772
GLYMA17G33535 Glycine max GLYMA17G33535 I 0.772
Thhalv10015465m.g Eutrema salsugineum Thhalv10015465m.g I 0.772
mgf025452m Mimulus guttatus mgf025452m I 0.771
Bra006599 Brassica rapa Bra006599 I 0.770
Cla011318 Citrullus lanatus Cla011318 I 0.770
Cucsa.141980 Cucumis sativus Cucsa.141980 I 0.770
Bo3g015600 Brassica oleracea Bo3g015600 I 0.770
Gorai.001G016800 Gossypium raimondii Gorai.001G016800 I 0.769
GLYMA09G08330 Glycine max GLYMA09G08330 I 0.769
Ca_09124 Cicer arietinum Ca_09124 I 0.768
Ciclev10009540m.g Citrus clementina Ciclev10009540m.g I 0.767
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I 0.767
Bra020162 Brassica rapa Bra020162 I 0.767
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.766
GLYMA15G19910 Glycine max GLYMA15G19910 I 0.766
Thhalv10019652m.g Eutrema salsugineum Thhalv10019652m.g I 0.765
MTR_2g043050 Medicago truncatula MTR_2g043050 I 0.763
Gorai.013G222700 Gossypium raimondii Gorai.013G222700 I 0.763
Cucsa.271180 Cucumis sativus Cucsa.271180 I 0.763
GLYMA14G12505 Glycine max GLYMA14G12505 I 0.763
GLYMA17G05240 Glycine max GLYMA17G05240 I 0.760
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.760
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.760
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.760
Bo2g023630 Brassica oleracea Bo2g023630 I 0.759
chr1.CM0133.1010.nc Lotus japonicus chr1.CM0133.1010.nc I 0.759
Solyc12g009240.1 Solanum lycopersicum Solyc12g009240.1 I 0.758
GLYMA13G17250 Glycine max GLYMA13G17250 I 0.758
PGSC0003DMG400002899 Solanum tuberosum PGSC0003DMG400002899 I 0.758
Bra025719 Brassica rapa Bra025719 I 0.756
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.755
Ca_19295 Cicer arietinum Ca_19295 I 0.750
MTR_2g043040 Medicago truncatula MTR_2g043040 I 0.749
MTR_2g043030 Medicago truncatula MTR_2g043030 I 0.749
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.748
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.748
Cla022291 Citrullus lanatus Cla022291 I 0.748
Cucsa.055920 Cucumis sativus Cucsa.055920 I 0.748
Ca_19297 Cicer arietinum Ca_19297 I 0.747
Ca_19296 Cicer arietinum Ca_19296 I 0.745
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.742
GSMUA_Achr5G05160_001 Musa acuminata GSMUA_Achr5G05160_001 I 0.739
PK18548.1 Cannabis sativa PK18548.1 I 0.734
Si008104m.g Setaria italica Si008104m.g I 0.731
OPUNC02G32160 Oryza punctata OPUNC02G32160 I 0.731
ORGLA02G0301600 Oryza glaberrima ORGLA02G0301600 I 0.731
ONIVA02G36910 Oryza nivara ONIVA02G36910 I 0.731
OMERI01G37050 Oryza meridionalis OMERI01G37050 I 0.731
BGIOSGA005486 Oryza indica BGIOSGA005486 I 0.731
ORUFI02G36340 Oryza rufipogon ORUFI02G36340 I 0.731
OGLUM02G35980 Oryza glumaepatula OGLUM02G35980 I 0.731
OS02G0781300 Oryza sativa OS02G0781300 I 0.731
chr6.CM0420.30.nd Lotus japonicus chr6.CM0420.30.nd I 0.724
Traes_6AL_E6DAE246D Triticum aestivum Traes_6AL_E6DAE246D I 0.721
MTR_1g014780 Medicago truncatula MTR_1g014780 I 0.720
GSMUA_AchrUn_randomG02200_001 Musa acuminata GSMUA_AchrUn_randomG02200_001 I 0.718
MTR_2g043020 Medicago truncatula MTR_2g043020 I 0.717
Gorai.004G285200 Gossypium raimondii Gorai.004G285200 I 0.715
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I 0.711
Pavir.Fa00741 Panicum virgatum Pavir.Fa00741 I 0.699
Pavir.Fb01602 Panicum virgatum Pavir.Fb01602 I 0.699
GRMZM2G163745 Zea mays GRMZM2G163745 I 0.699
ORUFI08G18850 Oryza rufipogon ORUFI08G18850 I 0.699
LPERR08G14000 Leersia perrieri LPERR08G14000 I 0.699
OBART08G16950 Oryza barthii OBART08G16950 I 0.699
Si015027m.g Setaria italica Si015027m.g I 0.699
ONIVA08G18470 Oryza nivara ONIVA08G18470 I 0.699
OPUNC08G14840 Oryza punctata OPUNC08G14840 I 0.699
OB08G24280 Oryza brachyantha OB08G24280 I 0.699
OGLUM08G17690 Oryza glumaepatula OGLUM08G17690 I 0.699
OS08G0454000 Oryza sativa OS08G0454000 I 0.699
BGIOSGA028781 Oryza indica BGIOSGA028781 I 0.699
Aquca_076_00040 Aquilegia coerulea Aquca_076_00040 I 0.698
TRAES3BF084200010CFD_g Triticum aestivum TRAES3BF084200010CFD_g I 0.692
MTR_7g028925 Medicago truncatula MTR_7g028925 I 0.691
BRADI3G37544 Brachypodium distachyon BRADI3G37544 I 0.690
F775_23111 Aegilops tauschii F775_23111 I 0.689
Sb07g022265 Sorghum bicolor Sb07g022265 I 0.685
AMTR_s00007p00268460 Amborella trichopoda AMTR_s00007p00268460 I 0.683