CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10040165.g
(
Linum usitatissimum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Lus10040165.g
T008924_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF1A
M00848_2.00
Arabidopsis thaliana
NNNNRNN
NNYNNNN
PBM
Franco-Zorrilla et al.(2014)
ATERF1
0.805
0.959
ERF1A
M00720_2.00
Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN
PBM
Chang et al.(2013)
pTH7202
0.805
0.959
ERF2
M01631_2.00
Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN
PBM
Weirauch et al.(2014)
pTH8113
0.787
0.939
ERF2
M06672_2.00
Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD
Dap-seq
OMalley et al.(2016)
ERF2_col_a
0.787
0.939
ERF2
M06673_2.00
Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN
Dap-seq
OMalley et al.(2016)
ERF2_colamp_a
0.787
0.939
ERF2_TOBAC
M09727_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF2_01
0.764
0.898
A5JTT1_WHEAT
M09700_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_01
0.725
0.898
PK02330.1
M01095_2.00
Cannabis sativa
NNNGCCGBCN
NGVCGGCNNN
PBM
Lambert et al.(2019)
pTH10093
0.698
0.816
ERF113
M01629_2.00
Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN
PBM
Weirauch et al.(2014)
pTH8097
0.698
0.776
ERF14
M01045_2.00
Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN
PBM
Sullivan et al.(2014)
pTH9793
0.696
0.755
ERF109
M00849_2.00
Arabidopsis thaliana
NGCCGNHNN
NNDNCGGCN
PBM
Franco-Zorrilla et al.(2014)
RRTF1
0.689
0.776
ERF109
M06653_2.00
Arabidopsis thaliana
CKSCGCCGYHWHHNN
NNDDWDRCGGCGSMG
Dap-seq
OMalley et al.(2016)
RRTF1_col_a
0.689
0.776
ERF109
M06654_2.00
Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN
NNNDAWDRCGGCGSHDNND
Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a
0.689
0.776
A4F249_TOBAC
M09726_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF2_01
0.687
0.755
ERF5_TOBAC
M09729_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF4_02
0.686
0.796
ERF095
M06624_2.00
Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR
Dap-seq
OMalley et al.(2016)
ESE1_col_a
0.684
0.755
ERF095
M06625_2.00
Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR
Dap-seq
OMalley et al.(2016)
ESE1_colamp_a
0.684
0.755
A4F248_TOBAC
M09725_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF1_01
0.684
0.755
ERF5
M00721_2.00
Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN
PBM
Chang et al.(2013)
pTH7197
0.680
0.796
ERF5
M06674_2.00
Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR
Dap-seq
OMalley et al.(2016)
ERF5_col_a
0.680
0.796
ERF5
M06675_2.00
Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN
Dap-seq
OMalley et al.(2016)
ERF5_colamp_a
0.680
0.796
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10040165
AP2
153
205
KHYRGVGQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGS
Links
Other
AP2
family TFs
Other
Linum usitatissimum
TFs
484 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy