Lus10040365.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10040365.g T008926_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TOE2
M00851_2.00 		Arabidopsis thaliana
NNNNTACGAGGWN
NWCCTCGTANNNN		 PBM
Franco-Zorrilla et al.(2014)
TOE2 		0.862 0.959
SMZ
M08402_2.00 		Arabidopsis thaliana
YCTCGTAC
GTACGAGR		 ChIP-chip
Mathelier et al.(2014)
MA0553.1 		0.853 0.959
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10040365 AP2 174 224

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.165940 Cucumis sativus Cucsa.165940 I 0.866
PGSC0003DMG400012038 Solanum tuberosum PGSC0003DMG400012038 I 0.866
Gorai.003G139800 Gossypium raimondii Gorai.003G139800 I 0.866
Gorai.011G241700 Gossypium raimondii Gorai.011G241700 I 0.866
PK16652.1 Cannabis sativa PK16652.1 I 0.866
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.866
Cla020387 Citrullus lanatus Cla020387 I 0.866
Sb10g001490 Sorghum bicolor Sb10g001490 I 0.865
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.865
Carubv10026292m.g Capsella rubella Carubv10026292m.g I 0.862
Cagra.1317s0005 Capsella grandiflora Cagra.1317s0005 I 0.862
Bostr.26833s0222 Boechera stricta Bostr.26833s0222 I 0.862
Bra002510 Brassica rapa Bra002510 I 0.862
Bo9g141100 Brassica oleracea Bo9g141100 I 0.862
Bra020262 Brassica rapa Bra020262 I 0.862
Thhalv10013367m.g Eutrema salsugineum Thhalv10013367m.g I 0.862
TOE2 Arabidopsis thaliana AT5G60120 D 0.862
Eucgr.G02793 Eucalyptus grandis Eucgr.G02793 I 0.854
Thhalv10010513m.g Eutrema salsugineum Thhalv10010513m.g I 0.853
Carubv10018526m.g Capsella rubella Carubv10018526m.g I 0.853
SMZ Arabidopsis thaliana AT3G54990 D 0.853
Cagra.1742s0021 Capsella grandiflora Cagra.1742s0021 I 0.853
Bostr.0697s0115 Boechera stricta Bostr.0697s0115 I 0.853
Bo8g087280 Brassica oleracea Bo8g087280 I 0.853
SMZ Arabidopsis lyrata fgenesh2_kg.5__1910__AT3G54990.1 I 0.853
Bra007123 Brassica rapa Bra007123 I 0.853
GLYMA10G22390 Glycine max GLYMA10G22390 I 0.850
GLYMA02G09600 Glycine max GLYMA02G09600 I 0.850
MTR_1g049140 Medicago truncatula MTR_1g049140 I 0.848
Bo6g068410 Brassica oleracea Bo6g068410 I 0.837
Pm018608 Prunus mume Pm018608 I 0.833
PRUPE_ppa018704mg Prunus persica PRUPE_ppa018704mg I 0.833
gene23316-v1.0-hybrid Fragaria vesca gene23316-v1.0-hybrid I 0.829
MDP0000281079 Malus domestica MDP0000281079 I 0.824
MDP0000285955 Malus domestica MDP0000285955 I 0.824
Ca_26761 Cicer arietinum Ca_26761 I 0.816
Carubv10023614m.g Capsella rubella Carubv10023614m.g I 0.793
Cagra.0716s0040 Capsella grandiflora Cagra.0716s0040 I 0.793
SNZ Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001673 I 0.786
Bostr.23794s0149 Boechera stricta Bostr.23794s0149 I 0.786
SNZ Arabidopsis thaliana AT2G39250 I 0.786
MDP0000130802 Malus domestica MDP0000130802 I 0.684
Al_scaffold_0003_2798 Arabidopsis lyrata Al_scaffold_0003_2798 I 0.683