Lus10041023.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10041023.g T008928_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF003
M06667_2.00 		Arabidopsis thaliana
DYCDCCRCCGYMDHHDYHN
NDRHDDHKRCGGYGGHGRH		 Dap-seq
OMalley et al.(2016)
ESE3_col_a 		0.754 0.941
ERF003
M06668_2.00 		Arabidopsis thaliana
HDYCKCCGCCGYHDH
DHDRCGGCGGMGRHD		 Dap-seq
OMalley et al.(2016)
ESE3_colamp_a 		0.754 0.941
SHN2
M06660_2.00 		Arabidopsis thaliana
DCCDCCRCCDCCDCCRCCRCY
RGYGGYGGHGGHGGYGGHGGH		 Dap-seq
OMalley et al.(2016)
SHN3_col_a 		0.678 0.824
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10041023 AP2 6 57

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

183 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10005343.g Linum usitatissimum Lus10005343.g I 0.802
GSMUA_Achr10G24170_001 Musa acuminata GSMUA_Achr10G24170_001 I 0.799
TCM_027394 Theobroma cacao TCM_027394 I 0.760
Ca_09076 Cicer arietinum Ca_09076 I 0.755
Bo9g011440 Brassica oleracea Bo9g011440 I 0.755
PGSC0003DMG400014196 Solanum tuberosum PGSC0003DMG400014196 I 0.755
GLYMA08G23160 Glycine max GLYMA08G23160 I 0.755
PGSC0003DMG400014127 Solanum tuberosum PGSC0003DMG400014127 I 0.755
Traes_6DL_31D678054 Triticum aestivum Traes_6DL_31D678054 I 0.755
Bra036536 Brassica rapa Bra036536 I 0.755
MLOC_6403 Hordeum vulgare MLOC_6403 I 0.755
Cla022694 Citrullus lanatus Cla022694 I 0.754
gene15036-v1.0-hybrid Fragaria vesca gene15036-v1.0-hybrid I 0.754
Cla015579 Citrullus lanatus Cla015579 I 0.754
Cla021283 Citrullus lanatus Cla021283 I 0.754
Ciclev10009593m.g Citrus clementina Ciclev10009593m.g I 0.754
Pm013752 Prunus mume Pm013752 I 0.754
cassava20662.m1 Manihot esculenta cassava20662.m1 I 0.754
cassava38443.m1 Manihot esculenta cassava38443.m1 I 0.754
cassava38444.m1 Manihot esculenta cassava38444.m1 I 0.754
MDP0000297646 Malus domestica MDP0000297646 I 0.754
29848.m004566 Ricinus communis 29848.m004566 I 0.754
29588.m000873 Ricinus communis 29588.m000873 I 0.754
MDP0000127054 Malus domestica MDP0000127054 I 0.754
Pm005717 Prunus mume Pm005717 I 0.754
MDP0000243375 Malus domestica MDP0000243375 I 0.754
Lus10035859.g Linum usitatissimum Lus10035859.g I 0.754
gene15940-v1.0-hybrid Fragaria vesca gene15940-v1.0-hybrid I 0.754
Solyc06g068360.2 Solanum lycopersicum Solyc06g068360.2 I 0.754
Solyc06g065820.2 Solanum lycopersicum Solyc06g065820.2 I 0.754
Gorai.009G060600 Gossypium raimondii Gorai.009G060600 I 0.754
SELMODRAFT_92334 Selaginella moellendorffii SELMODRAFT_92334 I 0.754
TCM_036933 Theobroma cacao TCM_036933 I 0.754
Ca_01729 Cicer arietinum Ca_01729 I 0.754
VIT_04s0008g06000 Vitis vinifera VIT_04s0008g06000 I 0.754
VIT_09s0002g09120 Vitis vinifera VIT_09s0002g09120 I 0.754
VIT_09s0002g09140 Vitis vinifera VIT_09s0002g09140 I 0.754
SELMODRAFT_121842 Selaginella moellendorffii SELMODRAFT_121842 I 0.754
Gorai.001G036500 Gossypium raimondii Gorai.001G036500 I 0.754
POPTR_0003s17830 Populus trichocarpa POPTR_0003s17830 I 0.754
POPTR_0001s14720 Populus trichocarpa POPTR_0001s14720 I 0.754
cassava8560.m1 Manihot esculenta cassava8560.m1 I 0.754
PGSC0003DMG400028500 Solanum tuberosum PGSC0003DMG400028500 I 0.754
POPTR_0006s27710 Populus trichocarpa POPTR_0006s27710 I 0.754
POPTR_0018s02280 Populus trichocarpa POPTR_0018s02280 I 0.754
Gorai.009G125100 Gossypium raimondii Gorai.009G125100 I 0.754
PRUPE_ppa016477mg Prunus persica PRUPE_ppa016477mg I 0.754
PRUPE_ppa011795mg Prunus persica PRUPE_ppa011795mg I 0.754
PGSC0003DMG400026136 Solanum tuberosum PGSC0003DMG400026136 I 0.754
evm.TU.supercontig_127.4 Carica papaya evm.TU.supercontig_127.4 I 0.754
Bostr.29827s0297 Boechera stricta Bostr.29827s0297 I 0.754
SapurV1A.0705s0080 Salix purpurea SapurV1A.0705s0080 I 0.754
Bra020490 Brassica rapa Bra020490 I 0.754
Bra009824 Brassica rapa Bra009824 I 0.754
Ciclev10026602m.g Citrus clementina Ciclev10026602m.g I 0.754
Aquca_016_00154 Aquilegia coerulea Aquca_016_00154 I 0.754
GLYMA13G44660 Glycine max GLYMA13G44660 I 0.754
GLYMA06G06780 Glycine max GLYMA06G06780 I 0.754
GLYMA04G06690 Glycine max GLYMA04G06690 I 0.754
fgenesh2_kg.6__2505__AT5G25190.1 Arabidopsis lyrata fgenesh2_kg.6__2505__AT5G25190.1 I 0.754
SapurV1A.0730s0010 Salix purpurea SapurV1A.0730s0010 I 0.754
SapurV1A.0835s0060 Salix purpurea SapurV1A.0835s0060 I 0.754
chr1.LjT03I11.120.nd Lotus japonicus chr1.LjT03I11.120.nd I 0.754
Carubv10001796m.g Capsella rubella Carubv10001796m.g I 0.754
ERF003 Arabidopsis thaliana AT5G25190 D 0.754
LjSGA_107677.3 Lotus japonicus LjSGA_107677.3 I 0.754
Thhalv10004973m.g Eutrema salsugineum Thhalv10004973m.g I 0.754
Cagra.1945s0014 Capsella grandiflora Cagra.1945s0014 I 0.754
SapurV1A.2028s0010 Salix purpurea SapurV1A.2028s0010 I 0.754
Bo7g096180 Brassica oleracea Bo7g096180 I 0.754
Bo2g158960 Brassica oleracea Bo2g158960 I 0.754
GLYMA14G13470 Glycine max GLYMA14G13470 I 0.754
GLYMA07G02930 Glycine max GLYMA07G02930 I 0.754
Cucsa.162720 Cucumis sativus Cucsa.162720 I 0.754
Cucsa.162710 Cucumis sativus Cucsa.162710 I 0.754
Eucgr.F03947 Eucalyptus grandis Eucgr.F03947 I 0.754
Cucsa.310360 Cucumis sativus Cucsa.310360 I 0.754
orange1.1g030482m.g Citrus sinensis orange1.1g030482m.g I 0.754
GLYMA15G00660 Glycine max GLYMA15G00660 I 0.754
MTR_4g008860 Medicago truncatula MTR_4g008860 I 0.754
MTR_3g106290 Medicago truncatula MTR_3g106290 I 0.754
SapurV1A.0280s0090 Salix purpurea SapurV1A.0280s0090 I 0.754
GLYMA17G33075 Glycine max GLYMA17G33075 I 0.754
Cucsa.105830 Cucumis sativus Cucsa.105830 I 0.754
orange1.1g029507m.g Citrus sinensis orange1.1g029507m.g I 0.754
Eucgr.C02719 Eucalyptus grandis Eucgr.C02719 I 0.754
MDP0000279733 Malus domestica MDP0000279733 I 0.753
Cucsa.271720 Cucumis sativus Cucsa.271720 I 0.752
PDK_20s1355821g002 Phoenix dactylifera PDK_20s1355821g002 I 0.752
Si024352m.g Setaria italica Si024352m.g I 0.752
GSMUA_Achr7G19320_001 Musa acuminata GSMUA_Achr7G19320_001 I 0.752
Pavir.J12977 Panicum virgatum Pavir.J12977 I 0.752
GRMZM2G104260 Zea mays GRMZM2G104260 I 0.752
Pavir.Ga00062 Panicum virgatum Pavir.Ga00062 I 0.752
Cla021320 Citrullus lanatus Cla021320 I 0.752
Sb06g031230 Sorghum bicolor Sb06g031230 I 0.752
AMTR_s00019p00232450 Amborella trichopoda AMTR_s00019p00232450 I 0.750
Ca_20050 Cicer arietinum Ca_20050 I 0.750
GRMZM2G156006 Zea mays GRMZM2G156006 I 0.750
Cla022695 Citrullus lanatus Cla022695 I 0.750
TRIUR3_25005 Triticum urartu TRIUR3_25005 I 0.749
Traes_7DS_433704E8E Triticum aestivum Traes_7DS_433704E8E I 0.749
ORUFI06G05350 Oryza rufipogon ORUFI06G05350 I 0.749
OB02G42740 Oryza brachyantha OB02G42740 I 0.749
MLOC_55323 Hordeum vulgare MLOC_55323 I 0.749
LPERR06G04830 Leersia perrieri LPERR06G04830 I 0.749
OB06G14850 Oryza brachyantha OB06G14850 I 0.749
OBART02G35950 Oryza barthii OBART02G35950 I 0.749
OGLUM06G05450 Oryza glumaepatula OGLUM06G05450 I 0.749
OGLUM02G37170 Oryza glumaepatula OGLUM02G37170 I 0.749
OBART06G05300 Oryza barthii OBART06G05300 I 0.749
LPERR02G29600 Leersia perrieri LPERR02G29600 I 0.749
Pavir.Aa00196 Panicum virgatum Pavir.Aa00196 I 0.749
BRADI1G47480 Brachypodium distachyon BRADI1G47480 I 0.749
BGIOSGA022427 Oryza indica BGIOSGA022427 I 0.749
BGIOSGA005433 Oryza indica BGIOSGA005433 I 0.749
BRADI3G54160 Brachypodium distachyon BRADI3G54160 I 0.749
F775_22946 Aegilops tauschii F775_22946 I 0.749
Pavir.Da02059 Panicum virgatum Pavir.Da02059 I 0.749
GRMZM2G135452 Zea mays GRMZM2G135452 I 0.749
Traes_7DS_433704E8E1 Triticum aestivum Traes_7DS_433704E8E1 I 0.749
OLONG_005458 Oryza longistaminata OLONG_005458 I 0.749
Sb10g005520 Sorghum bicolor Sb10g005520 I 0.749
OMERI02G33910 Oryza meridionalis OMERI02G33910 I 0.749
Si007359m.g Setaria italica Si007359m.g I 0.749
Si018550m.g Setaria italica Si018550m.g I 0.749
Traes_7AS_89D49F177 Triticum aestivum Traes_7AS_89D49F177 I 0.749
OS02G0797100 Oryza sativa OS02G0797100 I 0.749
OS06G0181700 Oryza sativa OS06G0181700 I 0.749
ONIVA02G37990 Oryza nivara ONIVA02G37990 I 0.749
OMERI06G06320 Oryza meridionalis OMERI06G06320 I 0.749
OPUNC06G05070 Oryza punctata OPUNC06G05070 I 0.749
ONIVA06G06080 Oryza nivara ONIVA06G06080 I 0.749
ORGLA02G0312200 Oryza glaberrima ORGLA02G0312200 I 0.749
estExt_gwp_gw1.C_580005 Physcomitrella patens estExt_gwp_gw1.C_580005 I 0.748
Lus10016815.g Linum usitatissimum Lus10016815.g I 0.747
Gorai.010G222900 Gossypium raimondii Gorai.010G222900 I 0.746
TRAES3BF176500010CFD_g Triticum aestivum TRAES3BF176500010CFD_g I 0.745
Traes_2AL_61DB73424 Triticum aestivum Traes_2AL_61DB73424 I 0.745
Traes_2BL_5BA37F95E Triticum aestivum Traes_2BL_5BA37F95E I 0.745
Solyc03g117130.2 Solanum lycopersicum Solyc03g117130.2 I 0.744
AMTR_s00150p00091360 Amborella trichopoda AMTR_s00150p00091360 I 0.744
Pavir.J20772 Panicum virgatum Pavir.J20772 I 0.743
GSMUA_Achr7G16060_001 Musa acuminata GSMUA_Achr7G16060_001 I 0.743
PK28394.1 Cannabis sativa PK28394.1 I 0.742
mg019221m Mimulus guttatus mg019221m I 0.741
GRMZM2G067463 Zea mays GRMZM2G067463 I 0.740
Gorai.010G117500 Gossypium raimondii Gorai.010G117500 I 0.740
Lus10041614.g Linum usitatissimum Lus10041614.g I 0.739
gw1.21.122.1 Physcomitrella patens gw1.21.122.1 I 0.738
GRMZM2G111415 Zea mays GRMZM2G111415 I 0.738
Sb04g036020 Sorghum bicolor Sb04g036020 I 0.738
GSMUA_Achr9G13760_001 Musa acuminata GSMUA_Achr9G13760_001 I 0.732
Cla012931 Citrullus lanatus Cla012931 I 0.730
Cucsa.096220 Cucumis sativus Cucsa.096220 I 0.730
Cla006213 Citrullus lanatus Cla006213 I 0.730
Gorai.011G082900 Gossypium raimondii Gorai.011G082900 I 0.722
Cla012914 Citrullus lanatus Cla012914 I 0.718
Lus10019414.g Linum usitatissimum Lus10019414.g I 0.715
Bo9g011380 Brassica oleracea Bo9g011380 I 0.715
evm.TU.supercontig_10.113 Carica papaya evm.TU.supercontig_10.113 I 0.714
GSMUA_Achr5G22840_001 Musa acuminata GSMUA_Achr5G22840_001 I 0.714
GSMUA_Achr4G02200_001 Musa acuminata GSMUA_Achr4G02200_001 I 0.713
PGSC0003DMG400030228 Solanum tuberosum PGSC0003DMG400030228 I 0.713
OPUNC04G25430 Oryza punctata OPUNC04G25430 I 0.710
OB04G34960 Oryza brachyantha OB04G34960 I 0.701
Bra036543 Brassica rapa Bra036543 I 0.700
Thhalv10005514m.g Eutrema salsugineum Thhalv10005514m.g I 0.696
BGIOSGA014194 Oryza indica BGIOSGA014194 I 0.682
BGIOSGA014193 Oryza indica BGIOSGA014193 I 0.682
ONIVA04G26640 Oryza nivara ONIVA04G26640 I 0.682
ORGLA04G0242300 Oryza glaberrima ORGLA04G0242300 I 0.682
ORUFI04G29600 Oryza rufipogon ORUFI04G29600 I 0.682
OMERI04G23370 Oryza meridionalis OMERI04G23370 I 0.682
OGLUM04G27860 Oryza glumaepatula OGLUM04G27860 I 0.682
OBART04G27970 Oryza barthii OBART04G27970 I 0.682
Carubv10003042m.g Capsella rubella Carubv10003042m.g I 0.678
Bostr.23997s0014 Boechera stricta Bostr.23997s0014 I 0.678
SHN2 Arabidopsis thaliana AT5G11190 D 0.678
Carubv10003050m.g Capsella rubella Carubv10003050m.g I 0.678
Bra008985 Brassica rapa Bra008985 I 0.678
Bo9g171490 Brassica oleracea Bo9g171490 I 0.678
SHN3 Arabidopsis lyrata Al_scaffold_0006_1028 I 0.678