MDP0000119956 (Malus domestica)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 MDP0000119956 T008945_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK24580.1
M01101_2.00
Cannabis sativa
VGCCGGCM

KGCCGGCB
PBM
Lambert et al.(2019)
pTH11280
0.750 0.898
ERF118
M01047_2.00
Arabidopsis thaliana
NCGCCGYNN

NNRCGGCGN
PBM
Sullivan et al.(2014)
pTH7330
0.683 0.673
ERF118
M06591_2.00
Arabidopsis thaliana
YHDYCKCCGCCGYHD

HDRCGGCGGMGRHDR
Dap-seq
OMalley et al.(2016)
CRF10_col100_a
0.683 0.673
ERF118
M06592_2.00
Arabidopsis thaliana
NGDATCHNDGATTCNNH

DNNGAATCHNDGATHCN
Dap-seq
OMalley et al.(2016)
CRF10_colamp_a
0.683 0.673
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000119956 AP2 112 163

Links

Other AP2 family TFs
Other Malus domestica TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MDP0000743350 Malus domestica MDP0000743350 I 0.828
MDP0000759299 Malus domestica MDP0000759299 I 0.800
Pm029052 Prunus mume Pm029052 I 0.791
PRUPE_ppa008514mg Prunus persica PRUPE_ppa008514mg I 0.775
gene03751-v1.0-hybrid Fragaria vesca gene03751-v1.0-hybrid I 0.756
PK24580.1 Cannabis sativa PK24580.1 D 0.750
VIT_01s0011g03470 Vitis vinifera VIT_01s0011g03470 I 0.750
Cucsa.365320 Cucumis sativus Cucsa.365320 I 0.731
Cla008128 Citrullus lanatus Cla008128 I 0.731
chr6.LjT13N05.60.nc Lotus japonicus chr6.LjT13N05.60.nc I 0.729
LjSGA_132504.1 Lotus japonicus LjSGA_132504.1 I 0.729
LjSGA_016572.1 Lotus japonicus LjSGA_016572.1 I 0.729
mgf006610m Mimulus guttatus mgf006610m I 0.726
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.718
Eucgr.G02326 Eucalyptus grandis Eucgr.G02326 I 0.707
PGSC0003DMG400015880 Solanum tuberosum PGSC0003DMG400015880 I 0.700
Solyc04g007180.1 Solanum lycopersicum Solyc04g007180.1 I 0.700
chr2.CM0903.260.nd Lotus japonicus chr2.CM0903.260.nd I 0.687
Ca_05485 Cicer arietinum Ca_05485 I 0.686
GLYMA01G20383 Glycine max GLYMA01G20383 I 0.684
ERF118 Arabidopsis thaliana AT1G68550 D 0.683
GLYMA20G24920 Glycine max GLYMA20G24920 I 0.679