CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000262710
(
Malus domestica
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
MDP0000262710
T009058_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT1G63040
M06590_2.00
Arabidopsis thaliana
TTGAAA
TTTCAA
Dap-seq
OMalley et al.(2016)
AT1G63040_col_a
0.694
0.878
ERF027
M06566_2.00
Arabidopsis thaliana
NNNNNNHNNHNYYRCCGACAN
NTGTCGGYRRNDNNDNNNNNN
Dap-seq
OMalley et al.(2016)
AT1G12630_col_a
0.691
0.918
ERF027
M06567_2.00
Arabidopsis thaliana
NNYYRCCGACANHNNN
NNNDNTGTCGGYRRNN
Dap-seq
OMalley et al.(2016)
AT1G12630_colamp_a
0.691
0.918
ERF025
M06680_2.00
Arabidopsis thaliana
NNNYYGCCGACANHN
NDNTGTCGGCRRNNN
Dap-seq
OMalley et al.(2016)
Rap210_col_a
0.682
0.878
ERF025
M06681_2.00
Arabidopsis thaliana
NNNYNRCCGACANN
NNTGTCGGYNRNNN
Dap-seq
OMalley et al.(2016)
Rap210_colamp_a
0.682
0.878
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000262710
AP2
70
120
PVYRGIRCRNGKWVSEIREPRKTTRIWLGTYPKPEMAAAAYDVAAIALKGP
Links
Other
AP2
family TFs
Other
Malus domestica
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MDP0000189347
Malus domestica
MDP0000189347
I
0.732
Ciclev10023840m.g
Citrus clementina
Ciclev10023840m.g
I
0.710
orange1.1g030591m.g
Citrus sinensis
orange1.1g030591m.g
N
0.701
AT1G63040
Arabidopsis thaliana
AT1G63040
D
0.694
ERF027
Arabidopsis thaliana
AT1G12630
D
0.691
Carubv10012147m.g
Capsella rubella
Carubv10012147m.g
I
0.691
Thhalv10009659m.g
Eutrema salsugineum
Thhalv10009659m.g
I
0.691
BRADI3G51610
Brachypodium distachyon
BRADI3G51610
N
0.690
Solyc08g080290.2
Solanum lycopersicum
Solyc08g080290.2
I
0.688
PGSC0003DMG400022759
Solanum tuberosum
PGSC0003DMG400022759
I
0.688
Cagra.0568s0175
Capsella grandiflora
Cagra.0568s0175
I
0.686
scaffold_801641.1
Arabidopsis lyrata
scaffold_801641.1
I
0.685
TCM_016176
Theobroma cacao
TCM_016176
I
0.685
Cagra.6357s0007
Capsella grandiflora
Cagra.6357s0007
I
0.685
Carubv10022214m.g
Capsella rubella
Carubv10022214m.g
I
0.685
Aquca_013_00433
Aquilegia coerulea
Aquca_013_00433
I
0.684
Bostr.13671s0198
Boechera stricta
Bostr.13671s0198
I
0.683
ERF025
Arabidopsis thaliana
AT5G52020
D
0.682
fgenesh1_pm.C_scaffold_1001063
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1001063
I
0.682
scaffold_101390.1
Arabidopsis lyrata
scaffold_101390.1
I
0.682
Thhalv10023678m.g
Eutrema salsugineum
Thhalv10023678m.g
I
0.682
SapurV1A.0282s0060
Salix purpurea
SapurV1A.0282s0060
N
0.681
Traes_6DL_FD6D63D1A
Triticum aestivum
Traes_6DL_FD6D63D1A
N
0.681
MLOC_62554
Hordeum vulgare
MLOC_62554
N
0.681
POPTR_0001s08740
Populus trichocarpa
POPTR_0001s08740
N
0.680
Cla011673
Citrullus lanatus
Cla011673
I
0.680