orange1.1g014204m.g (Citrus sinensis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 orange1.1g014204m.g T009210_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PLT1
M06622_2.00
Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN

NNDYCTYGRDWWNCGTGHH
Dap-seq
OMalley et al.(2016)
PLT1_col_a
0.887 0.895
PLT1
M06623_2.00
Arabidopsis thaliana
DYDCRNWTYYCRAG

CTYGRRAWNYGHRH
Dap-seq
OMalley et al.(2016)
PLT1_colamp_a
0.887 0.895
AIL7
M06688_2.00
Arabidopsis thaliana
CRNWTHYCRAG

CTYGRDAWNYG
Dap-seq
OMalley et al.(2016)
AIL7_col_a
0.886 0.933
AIL7
M06689_2.00
Arabidopsis thaliana
DCRNWTHYCRAG

CTYGRDAWNYGH
Dap-seq
OMalley et al.(2016)
AIL7_colamp_a
0.886 0.933
ANT
M02647_2.00
Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW

WDNRCHTBGGGAWNYGTGYNH
SELEX
Mathelier et al.(2014)
MA0571.1
0.885 0.886
ANT
M09705_2.00
Arabidopsis thaliana
CACRNWTCCCRAKG

CMTYGGGAWNYGTG
Transfac
Matys et al.(2006)
P$ANT_01
0.885 0.886
Q6SA75_TOBAC
M09733_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_01
0.884 0.886
Q6SA75_TOBAC
M09734_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_02
0.884 0.886
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g014204m AP2 107 167
orange1.1g014204m AP2 209 261

Links

Other AP2 family TFs
Other Citrus sinensis TFs

Invalid Input OrderBy

560 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action