orange1.1g046901m.g (Citrus sinensis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 orange1.1g046901m.g T009310_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF021
M06593_2.00
Arabidopsis thaliana
HNYCDYCDYCDYCRCCGHCD

HGDCGGYGRHGRHGRHGRND
Dap-seq
OMalley et al.(2016)
AT1G71450_col_a
0.737 0.860
ERF021
M06594_2.00
Arabidopsis thaliana
NHNNCRCCGHCDH

DHGDCGGYGNNDN
Dap-seq
OMalley et al.(2016)
AT1G71450_colamp_a
0.737 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g046901m AP2 11 62

Links

Other AP2 family TFs
Other Citrus sinensis TFs

82 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ERF021 Arabidopsis thaliana AT1G71450 D 0.737
Pm004269 Prunus mume Pm004269 I 0.756
Carubv10011715m.g Capsella rubella Carubv10011715m.g I 0.687
Carubv10012215m.g Capsella rubella Carubv10012215m.g I 0.731
Carubv10022349m.g Capsella rubella Carubv10022349m.g I 0.737
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I 0.748
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I 0.829
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I 0.753
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I 0.720
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I 0.733
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I 0.737
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I 0.710
Pm004272 Prunus mume Pm004272 I 0.686
27805.m000021 Ricinus communis 27805.m000021 I 0.717
28118.m000034 Ricinus communis 28118.m000034 I 0.718
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I 0.726
cassava45911.m1 Manihot esculenta cassava45911.m1 I 0.690
cassava8552.m1 Manihot esculenta cassava8552.m1 I 0.726
Cucsa.237150 Cucumis sativus Cucsa.237150 I 0.719
Bostr.10273s0203 Boechera stricta Bostr.10273s0203 I 0.692
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I 0.719
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I 0.738
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I 0.688
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I 0.726
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I 0.726
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I 0.688
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I 0.701
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I 0.708
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I 0.734
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I 0.765
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I 0.701
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I 0.717
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I 0.710
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I 0.741
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I 0.750
Lus10002953.g Linum usitatissimum Lus10002953.g I 0.692
Lus10006173.g Linum usitatissimum Lus10006173.g I 0.712
Lus10041050.g Linum usitatissimum Lus10041050.g I 0.706
MDP0000283350 Malus domestica MDP0000283350 I 0.753
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I 0.748
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I 0.691
Cla012665 Citrullus lanatus Cla012665 I 0.725
VIT_18s0001g05890 Vitis vinifera VIT_18s0001g05890 I 0.697
MTR_5g008590 Medicago truncatula MTR_5g008590 I 0.765
GLYMA11G01640 Glycine max GLYMA11G01640 I 0.765
GLYMA01G44140 Glycine max GLYMA01G44140 I 0.765
GLYMA01G44130 Glycine max GLYMA01G44130 I 0.708
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I 0.737
Bra028009 Brassica rapa Bra028009 I 0.687
Bra016136 Brassica rapa Bra016136 I 0.724
Bra010210 Brassica rapa Bra010210 I 0.722
Bra007975 Brassica rapa Bra007975 I 0.722
Bra003924 Brassica rapa Bra003924 I 0.697
Bo8g027240 Brassica oleracea Bo8g027240 I 0.713
Bo6g113020 Brassica oleracea Bo6g113020 I 0.717
Bo6g094210 Brassica oleracea Bo6g094210 I 0.697
Bo6g046850 Brassica oleracea Bo6g046850 I 0.681
Bo5g086680 Brassica oleracea Bo5g086680 I 0.716
Bo2g072910 Brassica oleracea Bo2g072910 I 0.737
ERF022 Arabidopsis thaliana AT1G33760 I 0.707
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I 0.686
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I 0.726
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I 0.697
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I 0.685
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I 0.756
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I 0.701
TCM_036270 Theobroma cacao TCM_036270 I 0.741
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I 0.720
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I 0.701
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I 0.690
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I 0.717
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I 0.698
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I 0.684
Traes_2BL_9CD6E043A Triticum aestivum Traes_2BL_9CD6E043A I 0.679
TRIUR3_32168 Triticum urartu TRIUR3_32168 I 0.678
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I 0.698
TCM_036269 Theobroma cacao TCM_036269 I 0.718
ONIVA04G11950 Oryza nivara ONIVA04G11950 N 0.677
LPERR04G10650 Leersia perrieri LPERR04G10650 N 0.679
ORUFI04G15010 Oryza rufipogon ORUFI04G15010 N 0.677
ORGLA04G0108200 Oryza glaberrima ORGLA04G0108200 N 0.677
OMERI04G12360 Oryza meridionalis OMERI04G12360 N 0.677