CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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orange1.1g047100m.g
(
Citrus sinensis
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
orange1.1g047100m.g
T009311_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
A5JTT1_WHEAT
M09700_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_01
0.728
0.833
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD
HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.723
0.896
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.723
0.896
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.723
0.896
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
orange1.1g047100m
AP2
134
185
QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFAYDRAAFKMRGS
Links
Other
AP2
family TFs
Other
Citrus sinensis
TFs
108 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ciclev10022025m.g
Citrus clementina
Ciclev10022025m.g
I
0.842
MDP0000907929
Malus domestica
MDP0000907929
I
0.797
MDP0000133485
Malus domestica
MDP0000133485
I
0.797
MDP0000189033
Malus domestica
MDP0000189033
I
0.797
Gorai.004G070600
Gossypium raimondii
Gorai.004G070600
I
0.784
MDP0000153445
Malus domestica
MDP0000153445
I
0.779
MDP0000317950
Malus domestica
MDP0000317950
I
0.779
Gorai.004G070500
Gossypium raimondii
Gorai.004G070500
I
0.771
Gorai.004G070800
Gossypium raimondii
Gorai.004G070800
I
0.771
Ciclev10021132m.g
Citrus clementina
Ciclev10021132m.g
I
0.759
orange1.1g039729m.g
Citrus sinensis
orange1.1g039729m.g
I
0.739
POPTR_0014s04600
Populus trichocarpa
POPTR_0014s04600
I
0.735
cassava19881.m1
Manihot esculenta
cassava19881.m1
I
0.735
cassava19882.m1
Manihot esculenta
cassava19882.m1
I
0.734
30174.m008755
Ricinus communis
30174.m008755
I
0.729
orange1.1g032263m.g
Citrus sinensis
orange1.1g032263m.g
I
0.728
A5JTT1_WHEAT
Triticum aestivum
A5JTT1_WHEAT
D
0.728
Ciclev10022734m.g
Citrus clementina
Ciclev10022734m.g
I
0.728
Eucgr.G00397
Eucalyptus grandis
Eucgr.G00397
I
0.727
PRUPE_ppb014367mg
Prunus persica
PRUPE_ppb014367mg
I
0.727
Eucgr.G00002
Eucalyptus grandis
Eucgr.G00002
I
0.725
TCM_005706
Theobroma cacao
TCM_005706
I
0.724
Bra037630
Brassica rapa
Bra037630
I
0.723
Carubv10023967m.g
Capsella rubella
Carubv10023967m.g
I
0.723
Cagra.0239s0035
Capsella grandiflora
Cagra.0239s0035
I
0.723
Bra004873
Brassica rapa
Bra004873
I
0.723
Bo4g195220
Brassica oleracea
Bo4g195220
I
0.723
ATERF13
Arabidopsis lyrata
scaffold_403422.1
I
0.723
Thhalv10001758m.g
Eutrema salsugineum
Thhalv10001758m.g
I
0.723
Bo4g024140
Brassica oleracea
Bo4g024140
I
0.723
ERF13
Arabidopsis thaliana
AT2G44840
D
0.723
Pm017696
Prunus mume
Pm017696
I
0.721
POPTR_0014s04640
Populus trichocarpa
POPTR_0014s04640
I
0.721
PRUPE_ppa016903mg
Prunus persica
PRUPE_ppa016903mg
I
0.721
Eucgr.G00392
Eucalyptus grandis
Eucgr.G00392
I
0.721
Gorai.007G086000
Gossypium raimondii
Gorai.007G086000
I
0.720
GLYMA03G26520
Glycine max
GLYMA03G26520
I
0.720
GLYMA18G48730
Glycine max
GLYMA18G48730
I
0.719
GLYMA09G37780
Glycine max
GLYMA09G37780
I
0.718
Pm017699
Prunus mume
Pm017699
I
0.718
30174.m008756
Ricinus communis
30174.m008756
I
0.718
SapurV1A.0124s0170
Salix purpurea
SapurV1A.0124s0170
I
0.718
POPTR_0014s04610
Populus trichocarpa
POPTR_0014s04610
I
0.716
Eucgr.G00391
Eucalyptus grandis
Eucgr.G00391
I
0.714
Eucgr.G00390
Eucalyptus grandis
Eucgr.G00390
I
0.714
Eucgr.G00388
Eucalyptus grandis
Eucgr.G00388
I
0.714
gene04917-v1.0-hybrid
Fragaria vesca
gene04917-v1.0-hybrid
I
0.713
TCM_005707
Theobroma cacao
TCM_005707
I
0.713
gene04913-v1.0-hybrid
Fragaria vesca
gene04913-v1.0-hybrid
I
0.712
orange1.1g044584m.g
Citrus sinensis
orange1.1g044584m.g
I
0.708
evm.TU.supercontig_101.15
Carica papaya
evm.TU.supercontig_101.15
I
0.708
cassava19883.m1
Manihot esculenta
cassava19883.m1
I
0.707
Cla021383
Citrullus lanatus
Cla021383
I
0.706
Ca_17211
Cicer arietinum
Ca_17211
I
0.706
Eucgr.G00396
Eucalyptus grandis
Eucgr.G00396
I
0.705
Eucgr.G00394
Eucalyptus grandis
Eucgr.G00394
I
0.705
Eucgr.G00393
Eucalyptus grandis
Eucgr.G00393
I
0.705
Lus10016212.g
Linum usitatissimum
Lus10016212.g
I
0.705
Cucsa.260030
Cucumis sativus
Cucsa.260030
I
0.703
chr3.CM0080.200.nd
Lotus japonicus
chr3.CM0080.200.nd
I
0.702
MTR_7g081795
Medicago truncatula
MTR_7g081795
I
0.701
MTR_8g006840
Medicago truncatula
MTR_8g006840
I
0.701
gw1.105.71.1
Physcomitrella patens
gw1.105.71.1
I
0.701
chr3.CM0080.270.nc
Lotus japonicus
chr3.CM0080.270.nc
I
0.700
GSMUA_Achr6G27040_001
Musa acuminata
GSMUA_Achr6G27040_001
I
0.698
TCM_005705
Theobroma cacao
TCM_005705
I
0.698
Lus10042907.g
Linum usitatissimum
Lus10042907.g
I
0.698
MTR_8g006825
Medicago truncatula
MTR_8g006825
I
0.698
cassava6588.valid.m1
Manihot esculenta
cassava6588.valid.m1
I
0.697
MTR_8g006815
Medicago truncatula
MTR_8g006815
I
0.697
Bostr.14547s0008
Boechera stricta
Bostr.14547s0008
I
0.696
POPTR_0014s04630
Populus trichocarpa
POPTR_0014s04630
I
0.694
Ca_06034
Cicer arietinum
Ca_06034
I
0.692
Gorai.004G165800
Gossypium raimondii
Gorai.004G165800
I
0.692
Lus10029331.g
Linum usitatissimum
Lus10029331.g
I
0.691
Lus10016224.g
Linum usitatissimum
Lus10016224.g
I
0.689
Lus10029318.g
Linum usitatissimum
Lus10029318.g
I
0.689
Cagra.4714s0001
Capsella grandiflora
Cagra.4714s0001
I
0.689
Carubv10005868m.g
Capsella rubella
Carubv10005868m.g
I
0.689
Lus10016210.g
Linum usitatissimum
Lus10016210.g
I
0.688
GSMUA_Achr3G15550_001
Musa acuminata
GSMUA_Achr3G15550_001
I
0.688
scaffold_604310.1
Arabidopsis lyrata
scaffold_604310.1
I
0.687
30174.m008759
Ricinus communis
30174.m008759
I
0.687
MDP0000178398
Malus domestica
MDP0000178398
I
0.685
SELMODRAFT_73854
Selaginella moellendorffii
SELMODRAFT_73854
I
0.684
MTR_7g081815
Medicago truncatula
MTR_7g081815
I
0.684
MLOC_51143
Hordeum vulgare
MLOC_51143
I
0.684
SapurV1A.0816s0060
Salix purpurea
SapurV1A.0816s0060
I
0.684
Traes_2AS_72E9B68D2
Triticum aestivum
Traes_2AS_72E9B68D2
I
0.684
MTR_7g081805
Medicago truncatula
MTR_7g081805
I
0.684
SELMODRAFT_87463
Selaginella moellendorffii
SELMODRAFT_87463
I
0.684
Traes_2BS_5E7287209
Triticum aestivum
Traes_2BS_5E7287209
I
0.684
Ca_06032
Cicer arietinum
Ca_06032
I
0.684
Eucgr.G00943
Eucalyptus grandis
Eucgr.G00943
I
0.683
Eucgr.E01561
Eucalyptus grandis
Eucgr.E01561
I
0.683
Gorai.008G108500
Gossypium raimondii
Gorai.008G108500
I
0.682
Lus10016209.g
Linum usitatissimum
Lus10016209.g
I
0.682
Lus10016223.g
Linum usitatissimum
Lus10016223.g
I
0.682
Cucsa.255330
Cucumis sativus
Cucsa.255330
I
0.682
GLYMA20G34560
Glycine max
GLYMA20G34560
I
0.681
GLYMA10G33070
Glycine max
GLYMA10G33070
I
0.681
evm.TU.supercontig_44.73
Carica papaya
evm.TU.supercontig_44.73
I
0.681
Thhalv10029212m.g
Eutrema salsugineum
Thhalv10029212m.g
I
0.679
GLYMA03G26437
Glycine max
GLYMA03G26437
I
0.679
MTR_1g074310
Medicago truncatula
MTR_1g074310
I
0.679
Lus10021873.g
Linum usitatissimum
Lus10021873.g
I
0.678
Eucgr.E01571
Eucalyptus grandis
Eucgr.E01571
I
0.677
SapurV1A.0233s0380
Salix purpurea
SapurV1A.0233s0380
I
0.677