orange1.1g047100m.g (Citrus sinensis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 orange1.1g047100m.g T009311_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
A5JTT1_WHEAT
M09700_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ERF3_01
0.728 0.833
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD

HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.723 0.896
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD

HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.723 0.896
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN

NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.723 0.896
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g047100m AP2 134 185

Links

Other AP2 family TFs
Other Citrus sinensis TFs

108 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A5JTT1_WHEAT Triticum aestivum A5JTT1_WHEAT D 0.728
ERF13 Arabidopsis thaliana AT2G44840 D 0.723
Eucgr.G00394 Eucalyptus grandis Eucgr.G00394 I 0.705
Eucgr.G00396 Eucalyptus grandis Eucgr.G00396 I 0.705
Eucgr.G00397 Eucalyptus grandis Eucgr.G00397 I 0.727
Eucgr.G00943 Eucalyptus grandis Eucgr.G00943 I 0.683
evm.TU.supercontig_101.15 Carica papaya evm.TU.supercontig_101.15 I 0.708
evm.TU.supercontig_44.73 Carica papaya evm.TU.supercontig_44.73 I 0.681
gene04913-v1.0-hybrid Fragaria vesca gene04913-v1.0-hybrid I 0.712
gene04917-v1.0-hybrid Fragaria vesca gene04917-v1.0-hybrid I 0.713
Gorai.004G070500 Gossypium raimondii Gorai.004G070500 I 0.771
Gorai.004G070600 Gossypium raimondii Gorai.004G070600 I 0.784
Gorai.004G070800 Gossypium raimondii Gorai.004G070800 I 0.771
Eucgr.G00393 Eucalyptus grandis Eucgr.G00393 I 0.705
Eucgr.G00392 Eucalyptus grandis Eucgr.G00392 I 0.721
Eucgr.G00391 Eucalyptus grandis Eucgr.G00391 I 0.714
Cagra.4714s0001 Capsella grandiflora Cagra.4714s0001 I 0.689
Carubv10005868m.g Capsella rubella Carubv10005868m.g I 0.689
Carubv10023967m.g Capsella rubella Carubv10023967m.g I 0.723
Ciclev10021132m.g Citrus clementina Ciclev10021132m.g I 0.759
Ciclev10022025m.g Citrus clementina Ciclev10022025m.g I 0.842
Ciclev10022734m.g Citrus clementina Ciclev10022734m.g I 0.728
Eucgr.E01561 Eucalyptus grandis Eucgr.E01561 I 0.683
Eucgr.E01571 Eucalyptus grandis Eucgr.E01571 I 0.677
Eucgr.G00002 Eucalyptus grandis Eucgr.G00002 I 0.725
Eucgr.G00388 Eucalyptus grandis Eucgr.G00388 I 0.714
Eucgr.G00390 Eucalyptus grandis Eucgr.G00390 I 0.714
Gorai.004G165800 Gossypium raimondii Gorai.004G165800 I 0.692
Gorai.007G086000 Gossypium raimondii Gorai.007G086000 I 0.720
Gorai.008G108500 Gossypium raimondii Gorai.008G108500 I 0.682
MDP0000317950 Malus domestica MDP0000317950 I 0.779
MDP0000907929 Malus domestica MDP0000907929 I 0.797
orange1.1g032263m.g Citrus sinensis orange1.1g032263m.g I 0.728
orange1.1g039729m.g Citrus sinensis orange1.1g039729m.g I 0.739
orange1.1g044584m.g Citrus sinensis orange1.1g044584m.g I 0.708
SapurV1A.0124s0170 Salix purpurea SapurV1A.0124s0170 I 0.718
SapurV1A.0233s0380 Salix purpurea SapurV1A.0233s0380 I 0.677
SapurV1A.0816s0060 Salix purpurea SapurV1A.0816s0060 I 0.684
Thhalv10001758m.g Eutrema salsugineum Thhalv10001758m.g I 0.723
Thhalv10029212m.g Eutrema salsugineum Thhalv10029212m.g I 0.679
chr3.CM0080.200.nd Lotus japonicus chr3.CM0080.200.nd I 0.702
MDP0000189033 Malus domestica MDP0000189033 I 0.797
MDP0000178398 Malus domestica MDP0000178398 I 0.685
Lus10016209.g Linum usitatissimum Lus10016209.g I 0.682
Lus10016210.g Linum usitatissimum Lus10016210.g I 0.688
Lus10016212.g Linum usitatissimum Lus10016212.g I 0.705
Lus10016223.g Linum usitatissimum Lus10016223.g I 0.682
Lus10016224.g Linum usitatissimum Lus10016224.g I 0.689
Lus10021873.g Linum usitatissimum Lus10021873.g I 0.678
Lus10029318.g Linum usitatissimum Lus10029318.g I 0.689
Lus10029331.g Linum usitatissimum Lus10029331.g I 0.691
Lus10042907.g Linum usitatissimum Lus10042907.g I 0.698
MDP0000133485 Malus domestica MDP0000133485 I 0.797
MDP0000153445 Malus domestica MDP0000153445 I 0.779
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I 0.700
Bo4g024140 Brassica oleracea Bo4g024140 I 0.723
MTR_7g081795 Medicago truncatula MTR_7g081795 I 0.701
MTR_7g081805 Medicago truncatula MTR_7g081805 I 0.684
MTR_7g081815 Medicago truncatula MTR_7g081815 I 0.684
MTR_8g006815 Medicago truncatula MTR_8g006815 I 0.697
MTR_8g006825 Medicago truncatula MTR_8g006825 I 0.698
MTR_8g006840 Medicago truncatula MTR_8g006840 I 0.701
POPTR_0014s04600 Populus trichocarpa POPTR_0014s04600 I 0.735
POPTR_0014s04610 Populus trichocarpa POPTR_0014s04610 I 0.716
POPTR_0014s04630 Populus trichocarpa POPTR_0014s04630 I 0.694
POPTR_0014s04640 Populus trichocarpa POPTR_0014s04640 I 0.721
PRUPE_ppa016903mg Prunus persica PRUPE_ppa016903mg I 0.721
MTR_1g074310 Medicago truncatula MTR_1g074310 I 0.679
MLOC_51143 Hordeum vulgare MLOC_51143 I 0.684
Bo4g195220 Brassica oleracea Bo4g195220 I 0.723
Bra004873 Brassica rapa Bra004873 I 0.723
Bra037630 Brassica rapa Bra037630 I 0.723
GLYMA03G26437 Glycine max GLYMA03G26437 I 0.679
GLYMA03G26520 Glycine max GLYMA03G26520 I 0.720
GLYMA09G37780 Glycine max GLYMA09G37780 I 0.718
GLYMA10G33070 Glycine max GLYMA10G33070 I 0.681
GLYMA18G48730 Glycine max GLYMA18G48730 I 0.719
GLYMA20G34560 Glycine max GLYMA20G34560 I 0.681
GSMUA_Achr3G15550_001 Musa acuminata GSMUA_Achr3G15550_001 I 0.688
GSMUA_Achr6G27040_001 Musa acuminata GSMUA_Achr6G27040_001 I 0.698
PRUPE_ppb014367mg Prunus persica PRUPE_ppb014367mg I 0.727
ATERF13 Arabidopsis lyrata scaffold_403422.1 I 0.723
scaffold_604310.1 Arabidopsis lyrata scaffold_604310.1 I 0.687
30174.m008755 Ricinus communis 30174.m008755 I 0.729
30174.m008756 Ricinus communis 30174.m008756 I 0.718
30174.m008759 Ricinus communis 30174.m008759 I 0.687
cassava19881.m1 Manihot esculenta cassava19881.m1 I 0.735
cassava19882.m1 Manihot esculenta cassava19882.m1 I 0.734
cassava19883.m1 Manihot esculenta cassava19883.m1 I 0.707
cassava6588.valid.m1 Manihot esculenta cassava6588.valid.m1 I 0.697
Cucsa.255330 Cucumis sativus Cucsa.255330 I 0.682
Cucsa.260030 Cucumis sativus Cucsa.260030 I 0.703
gw1.105.71.1 Physcomitrella patens gw1.105.71.1 I 0.701
Bostr.14547s0008 Boechera stricta Bostr.14547s0008 I 0.696
Pm017699 Prunus mume Pm017699 I 0.718
Pm017696 Prunus mume Pm017696 I 0.721
SELMODRAFT_73854 Selaginella moellendorffii SELMODRAFT_73854 I 0.684
SELMODRAFT_87463 Selaginella moellendorffii SELMODRAFT_87463 I 0.684
TCM_005705 Theobroma cacao TCM_005705 I 0.698
TCM_005706 Theobroma cacao TCM_005706 I 0.724
TCM_005707 Theobroma cacao TCM_005707 I 0.713
Traes_2AS_72E9B68D2 Triticum aestivum Traes_2AS_72E9B68D2 I 0.684
Traes_2BS_5E7287209 Triticum aestivum Traes_2BS_5E7287209 I 0.684
Ca_06032 Cicer arietinum Ca_06032 I 0.684
Ca_06034 Cicer arietinum Ca_06034 I 0.692
Ca_17211 Cicer arietinum Ca_17211 I 0.706
Cla021383 Citrullus lanatus Cla021383 I 0.706
Cagra.0239s0035 Capsella grandiflora Cagra.0239s0035 I 0.723