Pavir.Aa01729 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Aa01729 T009332_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
A4F248_TOBAC
M09725_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF1_01
0.688 0.760
A4F249_TOBAC
M09726_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF2_01
0.683 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa01729.1.p AP2 123 174

Links

Other AP2 family TFs
Other Panicum virgatum TFs

151 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pavir.Ab01891 Panicum virgatum Pavir.Ab01891 I 0.789
Sb04g022245 Sorghum bicolor Sb04g022245 I 0.775
Si019157m.g Setaria italica Si019157m.g I 0.769
Si010967m.g Setaria italica Si010967m.g I 0.769
Pavir.J15316 Panicum virgatum Pavir.J15316 I 0.764
Sb06g016710 Sorghum bicolor Sb06g016710 I 0.762
LPERR04G09480 Leersia perrieri LPERR04G09480 I 0.762
OPUNC02G17880 Oryza punctata OPUNC02G17880 I 0.761
Pavir.J16062 Panicum virgatum Pavir.J16062 I 0.760
Pavir.Aa01785 Panicum virgatum Pavir.Aa01785 I 0.758
GRMZM2G175525 Zea mays GRMZM2G175525 I 0.748
OBART02G19930 Oryza barthii OBART02G19930 I 0.744
OS02G0546600 Oryza sativa OS02G0546600 I 0.744
ORUFI02G21030 Oryza rufipogon ORUFI02G21030 I 0.744
ORGLA02G0170800 Oryza glaberrima ORGLA02G0170800 I 0.744
BRADI3G41543 Brachypodium distachyon BRADI3G41543 I 0.740
ORUFI02G21040 Oryza rufipogon ORUFI02G21040 I 0.740
OGLUM02G20200 Oryza glumaepatula OGLUM02G20200 I 0.739
SELMODRAFT_73177 Selaginella moellendorffii SELMODRAFT_73177 I 0.735
SELMODRAFT_73174 Selaginella moellendorffii SELMODRAFT_73174 I 0.735
ONIVA04G10960 Oryza nivara ONIVA04G10960 I 0.726
OMERI04G11450 Oryza meridionalis OMERI04G11450 I 0.726
ORGLA04G0098100 Oryza glaberrima ORGLA04G0098100 I 0.726
ORUFI04G13990 Oryza rufipogon ORUFI04G13990 I 0.726
OS04G0429050 Oryza sativa OS04G0429050 I 0.726
GRMZM2G173771 Zea mays GRMZM2G173771 I 0.722
GRMZM2G021790 Zea mays GRMZM2G021790 I 0.721
GRMZM2G103085 Zea mays GRMZM2G103085 I 0.718
GRMZM2G309731 Zea mays GRMZM2G309731 I 0.718
Sb08g004260 Sorghum bicolor Sb08g004260 I 0.716
GRMZM2G317596 Zea mays GRMZM2G317596 I 0.715
MLOC_10878 Hordeum vulgare MLOC_10878 I 0.712
Sb07g025843 Sorghum bicolor Sb07g025843 I 0.712
Sb09g017950 Sorghum bicolor Sb09g017950 I 0.710
Pavir.J28880 Panicum virgatum Pavir.J28880 I 0.710
LPERR02G27530 Leersia perrieri LPERR02G27530 I 0.710
Pavir.Cb01365 Panicum virgatum Pavir.Cb01365 I 0.710
Pavir.J21082 Panicum virgatum Pavir.J21082 I 0.710
OMERI08G16840 Oryza meridionalis OMERI08G16840 I 0.708
OPUNC12G04190 Oryza punctata OPUNC12G04190 I 0.708
ONIVA12G03810 Oryza nivara ONIVA12G03810 I 0.708
OGLUM12G04880 Oryza glumaepatula OGLUM12G04880 I 0.708
OBART12G04120 Oryza barthii OBART12G04120 I 0.708
BGIOSGA029071 Oryza indica BGIOSGA029071 I 0.708
ORGLA08G0225800 Oryza glaberrima ORGLA08G0225800 I 0.708
ORUFI12G04720 Oryza rufipogon ORUFI12G04720 I 0.708
BGIOSGA036561 Oryza indica BGIOSGA036561 I 0.708
OPUNC08G19980 Oryza punctata OPUNC08G19980 I 0.705
OGLUM02G34120 Oryza glumaepatula OGLUM02G34120 I 0.703
ONIVA02G33420 Oryza nivara ONIVA02G33420 I 0.703
BGIOSGA005557 Oryza indica BGIOSGA005557 I 0.703
OBART02G33690 Oryza barthii OBART02G33690 I 0.703
ORGLA02G0291300 Oryza glaberrima ORGLA02G0291300 I 0.703
Pavir.J05942 Panicum virgatum Pavir.J05942 I 0.702
AMTR_s00016p00092590 Amborella trichopoda AMTR_s00016p00092590 I 0.700
GRMZM2G085964 Zea mays GRMZM2G085964 I 0.700
Solyc04g012050.2 Solanum lycopersicum Solyc04g012050.2 I 0.699
Si013986m.g Setaria italica Si013986m.g I 0.699
PGSC0003DMG400023593 Solanum tuberosum PGSC0003DMG400023593 I 0.699
orange1.1g039390m.g Citrus sinensis orange1.1g039390m.g I 0.698
Ciclev10026032m.g Citrus clementina Ciclev10026032m.g I 0.698
LPERR05G10570 Leersia perrieri LPERR05G10570 I 0.697
GSMUA_Achr10G12150_001 Musa acuminata GSMUA_Achr10G12150_001 I 0.697
Si030810m.g Setaria italica Si030810m.g I 0.695
MDP0000180950 Malus domestica MDP0000180950 I 0.695
MDP0000390121 Malus domestica MDP0000390121 I 0.695
Gorai.003G048800 Gossypium raimondii Gorai.003G048800 I 0.695
Pm007084 Prunus mume Pm007084 I 0.695
VIT_01s0150g00120 Vitis vinifera VIT_01s0150g00120 I 0.695
Rap2.6L Vitis vinifera VIT_17s0000g00200 I 0.695
Solyc02g090790.1 Solanum lycopersicum Solyc02g090790.1 I 0.695
PRUPE_ppa011097mg Prunus persica PRUPE_ppa011097mg I 0.695
Traes_2DL_2536A1C8C Triticum aestivum Traes_2DL_2536A1C8C I 0.693
LPERR04G07810 Leersia perrieri LPERR04G07810 I 0.693
Traes_2BL_E5F50498D Triticum aestivum Traes_2BL_E5F50498D I 0.693
Traes_2AL_6B6086A7C Triticum aestivum Traes_2AL_6B6086A7C I 0.693
OGLUM04G10750 Oryza glumaepatula OGLUM04G10750 I 0.693
OB04G18180 Oryza brachyantha OB04G18180 I 0.693
BGIOSGA016313 Oryza indica BGIOSGA016313 I 0.693
GSMUA_Achr6G08140_001 Musa acuminata GSMUA_Achr6G08140_001 I 0.693
GRMZM2G425798 Zea mays GRMZM2G425798 I 0.693
GRMZM2G087059 Zea mays GRMZM2G087059 I 0.693
Pavir.Gb01735 Panicum virgatum Pavir.Gb01735 I 0.693
F775_31480 Aegilops tauschii F775_31480 I 0.693
BRADI5G08380 Brachypodium distachyon BRADI5G08380 I 0.693
ONIVA04G08960 Oryza nivara ONIVA04G08960 I 0.693
Pavir.J34881 Panicum virgatum Pavir.J34881 I 0.693
ORUFI04G12250 Oryza rufipogon ORUFI04G12250 I 0.693
OPUNC04G09060 Oryza punctata OPUNC04G09060 I 0.693
OS04G0398000 Oryza sativa OS04G0398000 I 0.693
Si010289m.g Setaria italica Si010289m.g I 0.693
ORGLA02G0353700 Oryza glaberrima ORGLA02G0353700 I 0.693
ORGLA04G0080400 Oryza glaberrima ORGLA04G0080400 I 0.693
PGSC0003DMG400007027 Solanum tuberosum PGSC0003DMG400007027 I 0.692
OS02G0764700 Oryza sativa OS02G0764700 I 0.692
Ciclev10005787m.g Citrus clementina Ciclev10005787m.g I 0.692
orange1.1g043184m.g Citrus sinensis orange1.1g043184m.g I 0.692
Bo3g009120 Brassica oleracea Bo3g009120 I 0.690
evm.TU.supercontig_38.79 Carica papaya evm.TU.supercontig_38.79 I 0.690
Bra006195 Brassica rapa Bra006195 I 0.690
GLYMA05G32040 Glycine max GLYMA05G32040 I 0.690
cassava4507.m1 Manihot esculenta cassava4507.m1 I 0.690
chr1.LjT14I13.10.nd Lotus japonicus chr1.LjT14I13.10.nd I 0.689
Si023329m.g Setaria italica Si023329m.g I 0.689
POPTR_0001s12990 Populus trichocarpa POPTR_0001s12990 I 0.689
Solyc06g068830.1 Solanum lycopersicum Solyc06g068830.1 I 0.689
Eucgr.B03559 Eucalyptus grandis Eucgr.B03559 I 0.689
PGSC0003DMG400025582 Solanum tuberosum PGSC0003DMG400025582 I 0.689
mgf022451m Mimulus guttatus mgf022451m I 0.689
SapurV1A.0340s0060 Salix purpurea SapurV1A.0340s0060 I 0.688
orange1.1g020801m.g Citrus sinensis orange1.1g020801m.g I 0.688
GLYMA18G51680 Glycine max GLYMA18G51680 I 0.688
GLYMA08G28835 Glycine max GLYMA08G28835 I 0.688
Ciclev10026052m.g Citrus clementina Ciclev10026052m.g I 0.688
A4F248_TOBAC Nicotiana tabacum A4F248_TOBAC D 0.688
Gorai.012G125700 Gossypium raimondii Gorai.012G125700 I 0.687
MDP0000316694 Malus domestica MDP0000316694 I 0.687
GRMZM2G131281 Zea mays GRMZM2G131281 I 0.687
Gorai.005G197100 Gossypium raimondii Gorai.005G197100 I 0.687
30128.m008556 Ricinus communis 30128.m008556 I 0.687
Solyc10g050970.1 Solanum lycopersicum Solyc10g050970.1 I 0.687
PK12040.1 Cannabis sativa PK12040.1 I 0.687
Sb02g029550 Sorghum bicolor Sb02g029550 I 0.687
TCM_008334 Theobroma cacao TCM_008334 I 0.687
cassava16956.m1 Manihot esculenta cassava16956.m1 I 0.687
cassava14904.m1 Manihot esculenta cassava14904.m1 I 0.687
cassava16948.m1 Manihot esculenta cassava16948.m1 I 0.687
MTR_8g092460 Medicago truncatula MTR_8g092460 I 0.686
XM_002304604.1 Populus trichocarpa POPTR_0003s16090 I 0.686
SapurV1A.0499s0150 Salix purpurea SapurV1A.0499s0150 I 0.686
MTR_7g020980 Medicago truncatula MTR_7g020980 I 0.685
GLYMA07G33511 Glycine max GLYMA07G33511 I 0.683
Solyc02g090800.1 Solanum lycopersicum Solyc02g090800.1 I 0.683
A4F249_TOBAC Nicotiana tabacum A4F249_TOBAC D 0.683
PK15705.1 Cannabis sativa PK15705.1 I 0.681
30174.m008757 Ricinus communis 30174.m008757 I 0.681
Lus10013959.g Linum usitatissimum Lus10013959.g I 0.681
OPUNC02G31100 Oryza punctata OPUNC02G31100 I 0.681
Solyc02g090770.1 Solanum lycopersicum Solyc02g090770.1 I 0.680
MDP0000175375 Malus domestica MDP0000175375 I 0.679
VIT_15s0021g01610 Vitis vinifera VIT_15s0021g01610 I 0.679
VIT_15s0021g01590 Vitis vinifera VIT_15s0021g01590 I 0.679
Solyc05g050790.1 Solanum lycopersicum Solyc05g050790.1 I 0.679
VIT_15s0021g01600 Vitis vinifera VIT_15s0021g01600 I 0.679
PGSC0003DMG400004024 Solanum tuberosum PGSC0003DMG400004024 I 0.679
Ca_09638 Cicer arietinum Ca_09638 I 0.678
Eucgr.G00392 Eucalyptus grandis Eucgr.G00392 I 0.678
Pavir.Da00220 Panicum virgatum Pavir.Da00220 I 0.677
GSMUA_Achr11G09660_001 Musa acuminata GSMUA_Achr11G09660_001 I 0.677
Bostr.25993s0288 Boechera stricta Bostr.25993s0288 I 0.677
GSMUA_Achr1G00490_001 Musa acuminata GSMUA_Achr1G00490_001 I 0.677