Pavir.Ab01891 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ab01891 T009344_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF13
M01615_2.00 		Arabidopsis thaliana
VGCCGSCD
HGSCGGCB		 PBM
Weirauch et al.(2014)
pTH7283 		0.686 0.686
ERF13
M06612_2.00 		Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN		 Dap-seq
OMalley et al.(2016)
ERF13_colamp_a 		0.686 0.686
ERF13
M06613_2.00 		Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD		 Dap-seq
OMalley et al.(2016)
ERF13_col_b 		0.686 0.686
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.684 0.745
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.682 0.745
ERF106
M01628_2.00 		Arabidopsis thaliana
NNNVCRVCN
NGBYGBNNN		 PBM
Weirauch et al.(2014)
pTH7426 		0.678 0.686
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab01891.1.p AP2 111 162

Links

Other AP2 family TFs
Other Panicum virgatum TFs

252 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Aa01729 Panicum virgatum Pavir.Aa01729 I 0.789
Sb04g022245 Sorghum bicolor Sb04g022245 I 0.769
Si019157m.g Setaria italica Si019157m.g I 0.763
Si010967m.g Setaria italica Si010967m.g I 0.763
LPERR04G09480 Leersia perrieri LPERR04G09480 I 0.763
Pavir.J15316 Panicum virgatum Pavir.J15316 I 0.758
Sb06g016710 Sorghum bicolor Sb06g016710 I 0.756
OPUNC02G17880 Oryza punctata OPUNC02G17880 I 0.755
Pavir.J16062 Panicum virgatum Pavir.J16062 I 0.754
Pavir.Aa01785 Panicum virgatum Pavir.Aa01785 I 0.752
GRMZM2G021790 Zea mays GRMZM2G021790 I 0.747
GRMZM2G175525 Zea mays GRMZM2G175525 I 0.743
ORUFI02G21030 Oryza rufipogon ORUFI02G21030 I 0.738
ORGLA02G0170800 Oryza glaberrima ORGLA02G0170800 I 0.738
OBART02G19930 Oryza barthii OBART02G19930 I 0.738
OS02G0546600 Oryza sativa OS02G0546600 I 0.738
BRADI3G41543 Brachypodium distachyon BRADI3G41543 I 0.734
ORUFI02G21040 Oryza rufipogon ORUFI02G21040 I 0.734
OGLUM02G20200 Oryza glumaepatula OGLUM02G20200 I 0.733
GRMZM2G317596 Zea mays GRMZM2G317596 I 0.731
ORGLA04G0098100 Oryza glaberrima ORGLA04G0098100 I 0.730
OMERI04G11450 Oryza meridionalis OMERI04G11450 I 0.730
ONIVA04G10960 Oryza nivara ONIVA04G10960 I 0.730
OS04G0429050 Oryza sativa OS04G0429050 I 0.730
ORUFI04G13990 Oryza rufipogon ORUFI04G13990 I 0.730
SELMODRAFT_73177 Selaginella moellendorffii SELMODRAFT_73177 I 0.729
SELMODRAFT_73174 Selaginella moellendorffii SELMODRAFT_73174 I 0.729
GRMZM2G173771 Zea mays GRMZM2G173771 I 0.724
MDP0000180950 Malus domestica MDP0000180950 I 0.721
orange1.1g039390m.g Citrus sinensis orange1.1g039390m.g I 0.720
Ciclev10026032m.g Citrus clementina Ciclev10026032m.g I 0.720
GRMZM2G103085 Zea mays GRMZM2G103085 I 0.719
Gorai.003G048800 Gossypium raimondii Gorai.003G048800 I 0.717
cassava4507.m1 Manihot esculenta cassava4507.m1 I 0.716
PGSC0003DMG400007027 Solanum tuberosum PGSC0003DMG400007027 I 0.713
GRMZM2G309731 Zea mays GRMZM2G309731 I 0.713
GLYMA05G32040 Glycine max GLYMA05G32040 I 0.712
LPERR02G27530 Leersia perrieri LPERR02G27530 I 0.712
Sb08g004260 Sorghum bicolor Sb08g004260 I 0.711
Ciclev10026052m.g Citrus clementina Ciclev10026052m.g I 0.710
orange1.1g020801m.g Citrus sinensis orange1.1g020801m.g I 0.710
MTR_8g092460 Medicago truncatula MTR_8g092460 I 0.708
MLOC_10878 Hordeum vulgare MLOC_10878 I 0.706
Sb07g025843 Sorghum bicolor Sb07g025843 I 0.706
ORGLA02G0291300 Oryza glaberrima ORGLA02G0291300 I 0.705
ONIVA02G33420 Oryza nivara ONIVA02G33420 I 0.705
OGLUM02G34120 Oryza glumaepatula OGLUM02G34120 I 0.705
OBART02G33690 Oryza barthii OBART02G33690 I 0.705
Sb09g017950 Sorghum bicolor Sb09g017950 I 0.705
Pavir.J21082 Panicum virgatum Pavir.J21082 I 0.705
BGIOSGA005557 Oryza indica BGIOSGA005557 I 0.705
Pavir.Cb01365 Panicum virgatum Pavir.Cb01365 I 0.705
Pavir.J28880 Panicum virgatum Pavir.J28880 I 0.704
BGIOSGA036561 Oryza indica BGIOSGA036561 I 0.702
OMERI08G16840 Oryza meridionalis OMERI08G16840 I 0.702
OGLUM12G04880 Oryza glumaepatula OGLUM12G04880 I 0.702
ONIVA12G03810 Oryza nivara ONIVA12G03810 I 0.702
OBART12G04120 Oryza barthii OBART12G04120 I 0.702
OPUNC12G04190 Oryza punctata OPUNC12G04190 I 0.702
ORUFI12G04720 Oryza rufipogon ORUFI12G04720 I 0.702
ORGLA08G0225800 Oryza glaberrima ORGLA08G0225800 I 0.702
BGIOSGA029071 Oryza indica BGIOSGA029071 I 0.702
Ca_09638 Cicer arietinum Ca_09638 I 0.700
Solyc01g090370.1 Solanum lycopersicum Solyc01g090370.1 I 0.700
Solyc05g050790.1 Solanum lycopersicum Solyc05g050790.1 I 0.700
LPERR05G21530 Leersia perrieri LPERR05G21530 I 0.700
OPUNC08G19980 Oryza punctata OPUNC08G19980 I 0.699
Bostr.25993s0288 Boechera stricta Bostr.25993s0288 I 0.698
Solyc01g090300.2 Solanum lycopersicum Solyc01g090300.2 I 0.697
Lus10013959.g Linum usitatissimum Lus10013959.g I 0.697
mgf021756m Mimulus guttatus mgf021756m I 0.697
OB05G33440 Oryza brachyantha OB05G33440 I 0.697
Pavir.J05942 Panicum virgatum Pavir.J05942 I 0.696
AMTR_s00016p00092590 Amborella trichopoda AMTR_s00016p00092590 I 0.694
GRMZM2G085964 Zea mays GRMZM2G085964 I 0.694
OS02G0764700 Oryza sativa OS02G0764700 I 0.694
PGSC0003DMG400026049 Solanum tuberosum PGSC0003DMG400026049 I 0.694
TCM_005704 Theobroma cacao TCM_005704 I 0.693
PGSC0003DMG400023593 Solanum tuberosum PGSC0003DMG400023593 I 0.693
Si013986m.g Setaria italica Si013986m.g I 0.693
Solyc04g012050.2 Solanum lycopersicum Solyc04g012050.2 I 0.693
PGSC0003DMG400026046 Solanum tuberosum PGSC0003DMG400026046 I 0.692
LPERR05G10570 Leersia perrieri LPERR05G10570 I 0.691
GSMUA_Achr10G12150_001 Musa acuminata GSMUA_Achr10G12150_001 I 0.691
Eucgr.K00128 Eucalyptus grandis Eucgr.K00128 I 0.691
Cucsa.255330 Cucumis sativus Cucsa.255330 I 0.691
Pavir.Ca00939 Panicum virgatum Pavir.Ca00939 I 0.691
Pavir.J34156 Panicum virgatum Pavir.J34156 I 0.690
Si030810m.g Setaria italica Si030810m.g I 0.690
Si024258m.g Setaria italica Si024258m.g I 0.690
Eucgr.G00392 Eucalyptus grandis Eucgr.G00392 I 0.690
VIT_15s0021g01610 Vitis vinifera VIT_15s0021g01610 I 0.690
VIT_15s0021g01600 Vitis vinifera VIT_15s0021g01600 I 0.690
VIT_15s0021g01590 Vitis vinifera VIT_15s0021g01590 I 0.690
PRUPE_ppa011097mg Prunus persica PRUPE_ppa011097mg I 0.689
MDP0000390121 Malus domestica MDP0000390121 I 0.689
Solyc02g090790.1 Solanum lycopersicum Solyc02g090790.1 I 0.689
F775_22380 Aegilops tauschii F775_22380 I 0.689
Pm007084 Prunus mume Pm007084 I 0.689
OPUNC05G23490 Oryza punctata OPUNC05G23490 I 0.689
Rap2.6L Vitis vinifera VIT_17s0000g00200 I 0.689
VIT_01s0150g00120 Vitis vinifera VIT_01s0150g00120 I 0.689
GRMZM2G425798 Zea mays GRMZM2G425798 I 0.688
BGIOSGA017558 Oryza indica BGIOSGA017558 I 0.688
GSMUA_Achr1G00490_001 Musa acuminata GSMUA_Achr1G00490_001 I 0.688
GLYMA03G26310 Glycine max GLYMA03G26310 I 0.688
Traes_2BL_E5F50498D Triticum aestivum Traes_2BL_E5F50498D I 0.688
BGIOSGA016313 Oryza indica BGIOSGA016313 I 0.688
GSMUA_Achr6G08140_001 Musa acuminata GSMUA_Achr6G08140_001 I 0.688
Solyc10g050970.1 Solanum lycopersicum Solyc10g050970.1 I 0.688
Traes_2AL_6B6086A7C Triticum aestivum Traes_2AL_6B6086A7C I 0.688
Si010289m.g Setaria italica Si010289m.g I 0.688
Traes_2DL_2536A1C8C Triticum aestivum Traes_2DL_2536A1C8C I 0.688
orange1.1g044584m.g Citrus sinensis orange1.1g044584m.g I 0.688
ORGLA02G0353700 Oryza glaberrima ORGLA02G0353700 I 0.688
OPUNC04G09060 Oryza punctata OPUNC04G09060 I 0.688
ONIVA05G27810 Oryza nivara ONIVA05G27810 I 0.688
ORGLA04G0080400 Oryza glaberrima ORGLA04G0080400 I 0.688
ORGLA05G0224000 Oryza glaberrima ORGLA05G0224000 I 0.688
GRMZM2G087059 Zea mays GRMZM2G087059 I 0.688
LPERR04G07810 Leersia perrieri LPERR04G07810 I 0.688
BRADI5G08380 Brachypodium distachyon BRADI5G08380 I 0.688
ONIVA04G08960 Oryza nivara ONIVA04G08960 I 0.688
F775_31480 Aegilops tauschii F775_31480 I 0.688
OBART05G25910 Oryza barthii OBART05G25910 I 0.688
OB04G18180 Oryza brachyantha OB04G18180 I 0.688
OGLUM04G10750 Oryza glumaepatula OGLUM04G10750 I 0.688
OMERI03G30010 Oryza meridionalis OMERI03G30010 I 0.688
OGLUM05G27510 Oryza glumaepatula OGLUM05G27510 I 0.688
ORUFI04G12250 Oryza rufipogon ORUFI04G12250 I 0.688
Pavir.J34881 Panicum virgatum Pavir.J34881 I 0.688
ORUFI05G27790 Oryza rufipogon ORUFI05G27790 I 0.688
Pavir.Gb01735 Panicum virgatum Pavir.Gb01735 I 0.688
OS04G0398000 Oryza sativa OS04G0398000 I 0.688
Ca_02325 Cicer arietinum Ca_02325 I 0.687
Bo9g014660 Brassica oleracea Bo9g014660 I 0.687
Bra035919 Brassica rapa Bra035919 I 0.687
Bo7g040810 Brassica oleracea Bo7g040810 I 0.687
Bra014925 Brassica rapa Bra014925 I 0.687
PGSC0003DMG400041045 Solanum tuberosum PGSC0003DMG400041045 I 0.686
Bo4g195220 Brassica oleracea Bo4g195220 I 0.686
PGSC0003DMG400036566 Solanum tuberosum PGSC0003DMG400036566 I 0.686
PK26398.1 Cannabis sativa PK26398.1 I 0.686
Bra004873 Brassica rapa Bra004873 I 0.686
Bra037630 Brassica rapa Bra037630 I 0.686
ERF13 Arabidopsis thaliana AT2G44840 D 0.686
Ciclev10005787m.g Citrus clementina Ciclev10005787m.g I 0.686
ATERF13 Arabidopsis lyrata scaffold_403422.1 I 0.686
Bo4g024140 Brassica oleracea Bo4g024140 I 0.686
orange1.1g043184m.g Citrus sinensis orange1.1g043184m.g I 0.686
Thhalv10001758m.g Eutrema salsugineum Thhalv10001758m.g I 0.686
Carubv10023967m.g Capsella rubella Carubv10023967m.g I 0.686
Solyc01g090310.2 Solanum lycopersicum Solyc01g090310.2 I 0.686
Cagra.0239s0035 Capsella grandiflora Cagra.0239s0035 I 0.686
Bra006195 Brassica rapa Bra006195 I 0.685
GLYMA07G33511 Glycine max GLYMA07G33511 I 0.685
Cla021384 Citrullus lanatus Cla021384 I 0.685
OPUNC02G31100 Oryza punctata OPUNC02G31100 I 0.685
Thhalv10022108m.g Eutrema salsugineum Thhalv10022108m.g I 0.685
evm.TU.supercontig_38.79 Carica papaya evm.TU.supercontig_38.79 I 0.685
Bo3g009120 Brassica oleracea Bo3g009120 I 0.685
A4F249_TOBAC Nicotiana tabacum A4F249_TOBAC D 0.684
gene04916-v1.0-hybrid Fragaria vesca gene04916-v1.0-hybrid I 0.684
Bo1g102220 Brassica oleracea Bo1g102220 I 0.684
Pm017698 Prunus mume Pm017698 I 0.684
VIT_07s0005g03280 Vitis vinifera VIT_07s0005g03280 I 0.684
POPTR_0014s04640 Populus trichocarpa POPTR_0014s04640 I 0.684
PRUPE_ppa023698mg Prunus persica PRUPE_ppa023698mg I 0.684
Bra023748 Brassica rapa Bra023748 I 0.684
MDP0000135205 Malus domestica MDP0000135205 I 0.683
Si023329m.g Setaria italica Si023329m.g I 0.683
Eucgr.B03559 Eucalyptus grandis Eucgr.B03559 I 0.683
evm.TU.supercontig_44.73 Carica papaya evm.TU.supercontig_44.73 I 0.683
MDP0000122665 Malus domestica MDP0000122665 I 0.683
mgf022451m Mimulus guttatus mgf022451m I 0.683
GSMUA_Achr5G12530_001 Musa acuminata GSMUA_Achr5G12530_001 I 0.683
PRUPE_ppb014367mg Prunus persica PRUPE_ppb014367mg I 0.683
POPTR_0001s12990 Populus trichocarpa POPTR_0001s12990 I 0.683
Gorai.008G219300 Gossypium raimondii Gorai.008G219300 I 0.683
PRUPE_ppa016903mg Prunus persica PRUPE_ppa016903mg I 0.683
Pm017696 Prunus mume Pm017696 I 0.683
chr1.LjT14I13.10.nd Lotus japonicus chr1.LjT14I13.10.nd I 0.683
Solyc06g068830.1 Solanum lycopersicum Solyc06g068830.1 I 0.683
SapurV1A.0340s0060 Salix purpurea SapurV1A.0340s0060 I 0.683
PGSC0003DMG400016004 Solanum tuberosum PGSC0003DMG400016004 I 0.683
PGSC0003DMG400025582 Solanum tuberosum PGSC0003DMG400025582 I 0.683
evm.TU.supercontig_101.15 Carica papaya evm.TU.supercontig_101.15 I 0.682
GLYMA08G28835 Glycine max GLYMA08G28835 I 0.682
mgf025885m Mimulus guttatus mgf025885m I 0.682
GLYMA18G51680 Glycine max GLYMA18G51680 I 0.682
A4F248_TOBAC Nicotiana tabacum A4F248_TOBAC D 0.682
Ca_00360 Cicer arietinum Ca_00360 I 0.681
Sb02g029550 Sorghum bicolor Sb02g029550 I 0.681
Gorai.005G197100 Gossypium raimondii Gorai.005G197100 I 0.681
Gorai.012G125700 Gossypium raimondii Gorai.012G125700 I 0.681
MDP0000316694 Malus domestica MDP0000316694 I 0.681
Pavir.Da00220 Panicum virgatum Pavir.Da00220 I 0.681
PK12040.1 Cannabis sativa PK12040.1 I 0.681
gene21167-v1.0-hybrid Fragaria vesca gene21167-v1.0-hybrid I 0.681
cassava14904.m1 Manihot esculenta cassava14904.m1 I 0.681
cassava16948.m1 Manihot esculenta cassava16948.m1 I 0.681
cassava16956.m1 Manihot esculenta cassava16956.m1 I 0.681
Solyc05g052030.1 Solanum lycopersicum Solyc05g052030.1 I 0.681
GRMZM2G131281 Zea mays GRMZM2G131281 I 0.681
30128.m008556 Ricinus communis 30128.m008556 I 0.681
VIT_15s0021g01630 Vitis vinifera VIT_15s0021g01630 I 0.681
TCM_008334 Theobroma cacao TCM_008334 I 0.681
cassava19883.m1 Manihot esculenta cassava19883.m1 I 0.680
MDP0000175375 Malus domestica MDP0000175375 I 0.680
GLYMA20G33800 Glycine max GLYMA20G33800 I 0.680
SapurV1A.0124s0170 Salix purpurea SapurV1A.0124s0170 I 0.680
SapurV1A.0499s0150 Salix purpurea SapurV1A.0499s0150 I 0.680
GLYMA10G33810 Glycine max GLYMA10G33810 I 0.680
Bra016063 Brassica rapa Bra016063 I 0.680
XM_002304604.1 Populus trichocarpa POPTR_0003s16090 I 0.680
Eucgr.G00397 Eucalyptus grandis Eucgr.G00397 I 0.680
gene04913-v1.0-hybrid Fragaria vesca gene04913-v1.0-hybrid I 0.680
Bo6g115850 Brassica oleracea Bo6g115850 I 0.680
Eucgr.A01091 Eucalyptus grandis Eucgr.A01091 I 0.680
GRMZM2G050851 Zea mays GRMZM2G050851 I 0.679
Pavir.Fb01507 Panicum virgatum Pavir.Fb01507 I 0.679
Pm019544 Prunus mume Pm019544 I 0.679
Pm017699 Prunus mume Pm017699 I 0.679
Pavir.J17283 Panicum virgatum Pavir.J17283 I 0.679
30174.m008755 Ricinus communis 30174.m008755 I 0.679
MTR_7g020980 Medicago truncatula MTR_7g020980 I 0.679
Solyc02g077360.1 Solanum lycopersicum Solyc02g077360.1 I 0.679
Bo7g077390 Brassica oleracea Bo7g077390 I 0.679
MDP0000517262 Malus domestica MDP0000517262 I 0.679
chr5.CM0909.360.nc Lotus japonicus chr5.CM0909.360.nc I 0.679
PRUPE_ppa022802mg Prunus persica PRUPE_ppa022802mg I 0.679
POPTR_0014s04610 Populus trichocarpa POPTR_0014s04610 I 0.679
Bostr.13129s0205 Boechera stricta Bostr.13129s0205 I 0.678
Bo9g175610 Brassica oleracea Bo9g175610 I 0.678
PK01935.1 Cannabis sativa PK01935.1 I 0.678
Bra028690 Brassica rapa Bra028690 I 0.678
cassava21353.m1 Manihot esculenta cassava21353.m1 I 0.678
Bra009250 Brassica rapa Bra009250 I 0.678
Cagra.2925s0026 Capsella grandiflora Cagra.2925s0026 I 0.678
Thhalv10014666m.g Eutrema salsugineum Thhalv10014666m.g I 0.678
ERF106 Arabidopsis thaliana AT5G07580 D 0.678
Pavir.J03216 Panicum virgatum Pavir.J03216 I 0.678
scaffold_600764.1 Arabidopsis lyrata scaffold_600764.1 I 0.678
Carubv10001989m.g Capsella rubella Carubv10001989m.g I 0.678
TCM_005706 Theobroma cacao TCM_005706 I 0.677
Bra003883 Brassica rapa Bra003883 I 0.677
Bo6g091540 Brassica oleracea Bo6g091540 I 0.677
PRUPE_ppa025748mg Prunus persica PRUPE_ppa025748mg I 0.677
gene04917-v1.0-hybrid Fragaria vesca gene04917-v1.0-hybrid I 0.677
Solyc02g090800.1 Solanum lycopersicum Solyc02g090800.1 I 0.677
Pm017700 Prunus mume Pm017700 I 0.677
Si008428m.g Setaria italica Si008428m.g I 0.677