CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ab01891
(
Panicum virgatum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Pavir.Ab01891
T009344_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF13
M01615_2.00
Arabidopsis thaliana
VGCCGSCD
HGSCGGCB
PBM
Weirauch et al.(2014)
pTH7283
0.686
0.686
ERF13
M06612_2.00
Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN
Dap-seq
OMalley et al.(2016)
ERF13_colamp_a
0.686
0.686
ERF13
M06613_2.00
Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD
Dap-seq
OMalley et al.(2016)
ERF13_col_b
0.686
0.686
A4F249_TOBAC
M09726_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF2_01
0.684
0.745
A4F248_TOBAC
M09725_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WRAF1_01
0.682
0.745
ERF106
M01628_2.00
Arabidopsis thaliana
NNNVCRVCN
NGBYGBNNN
PBM
Weirauch et al.(2014)
pTH7426
0.678
0.686
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ab01891.1.p
AP2
111
162
RSYRGVRRRPWGKWAAEIRNPKKAARVWLGTFATPEDAARAYDAAALRLRGS
Links
Other
AP2
family TFs
Other
Panicum virgatum
TFs
252 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Aa01729
Panicum virgatum
Pavir.Aa01729
I
0.789
Sb04g022245
Sorghum bicolor
Sb04g022245
I
0.769
Si019157m.g
Setaria italica
Si019157m.g
I
0.763
Si010967m.g
Setaria italica
Si010967m.g
I
0.763
LPERR04G09480
Leersia perrieri
LPERR04G09480
I
0.763
Pavir.J15316
Panicum virgatum
Pavir.J15316
I
0.758
Sb06g016710
Sorghum bicolor
Sb06g016710
I
0.756
OPUNC02G17880
Oryza punctata
OPUNC02G17880
I
0.755
Pavir.J16062
Panicum virgatum
Pavir.J16062
I
0.754
Pavir.Aa01785
Panicum virgatum
Pavir.Aa01785
I
0.752
GRMZM2G021790
Zea mays
GRMZM2G021790
I
0.747
GRMZM2G175525
Zea mays
GRMZM2G175525
I
0.743
ORUFI02G21030
Oryza rufipogon
ORUFI02G21030
I
0.738
ORGLA02G0170800
Oryza glaberrima
ORGLA02G0170800
I
0.738
OBART02G19930
Oryza barthii
OBART02G19930
I
0.738
OS02G0546600
Oryza sativa
OS02G0546600
I
0.738
BRADI3G41543
Brachypodium distachyon
BRADI3G41543
I
0.734
ORUFI02G21040
Oryza rufipogon
ORUFI02G21040
I
0.734
OGLUM02G20200
Oryza glumaepatula
OGLUM02G20200
I
0.733
GRMZM2G317596
Zea mays
GRMZM2G317596
I
0.731
ORGLA04G0098100
Oryza glaberrima
ORGLA04G0098100
I
0.730
OMERI04G11450
Oryza meridionalis
OMERI04G11450
I
0.730
ONIVA04G10960
Oryza nivara
ONIVA04G10960
I
0.730
OS04G0429050
Oryza sativa
OS04G0429050
I
0.730
ORUFI04G13990
Oryza rufipogon
ORUFI04G13990
I
0.730
SELMODRAFT_73177
Selaginella moellendorffii
SELMODRAFT_73177
I
0.729
SELMODRAFT_73174
Selaginella moellendorffii
SELMODRAFT_73174
I
0.729
GRMZM2G173771
Zea mays
GRMZM2G173771
I
0.724
MDP0000180950
Malus domestica
MDP0000180950
I
0.721
orange1.1g039390m.g
Citrus sinensis
orange1.1g039390m.g
I
0.720
Ciclev10026032m.g
Citrus clementina
Ciclev10026032m.g
I
0.720
GRMZM2G103085
Zea mays
GRMZM2G103085
I
0.719
Gorai.003G048800
Gossypium raimondii
Gorai.003G048800
I
0.717
cassava4507.m1
Manihot esculenta
cassava4507.m1
I
0.716
PGSC0003DMG400007027
Solanum tuberosum
PGSC0003DMG400007027
I
0.713
GRMZM2G309731
Zea mays
GRMZM2G309731
I
0.713
GLYMA05G32040
Glycine max
GLYMA05G32040
I
0.712
LPERR02G27530
Leersia perrieri
LPERR02G27530
I
0.712
Sb08g004260
Sorghum bicolor
Sb08g004260
I
0.711
Ciclev10026052m.g
Citrus clementina
Ciclev10026052m.g
I
0.710
orange1.1g020801m.g
Citrus sinensis
orange1.1g020801m.g
I
0.710
MTR_8g092460
Medicago truncatula
MTR_8g092460
I
0.708
MLOC_10878
Hordeum vulgare
MLOC_10878
I
0.706
Sb07g025843
Sorghum bicolor
Sb07g025843
I
0.706
ORGLA02G0291300
Oryza glaberrima
ORGLA02G0291300
I
0.705
ONIVA02G33420
Oryza nivara
ONIVA02G33420
I
0.705
OGLUM02G34120
Oryza glumaepatula
OGLUM02G34120
I
0.705
OBART02G33690
Oryza barthii
OBART02G33690
I
0.705
Sb09g017950
Sorghum bicolor
Sb09g017950
I
0.705
Pavir.J21082
Panicum virgatum
Pavir.J21082
I
0.705
BGIOSGA005557
Oryza indica
BGIOSGA005557
I
0.705
Pavir.Cb01365
Panicum virgatum
Pavir.Cb01365
I
0.705
Pavir.J28880
Panicum virgatum
Pavir.J28880
I
0.704
BGIOSGA036561
Oryza indica
BGIOSGA036561
I
0.702
OMERI08G16840
Oryza meridionalis
OMERI08G16840
I
0.702
OGLUM12G04880
Oryza glumaepatula
OGLUM12G04880
I
0.702
ONIVA12G03810
Oryza nivara
ONIVA12G03810
I
0.702
OBART12G04120
Oryza barthii
OBART12G04120
I
0.702
OPUNC12G04190
Oryza punctata
OPUNC12G04190
I
0.702
ORUFI12G04720
Oryza rufipogon
ORUFI12G04720
I
0.702
ORGLA08G0225800
Oryza glaberrima
ORGLA08G0225800
I
0.702
BGIOSGA029071
Oryza indica
BGIOSGA029071
I
0.702
Ca_09638
Cicer arietinum
Ca_09638
I
0.700
Solyc01g090370.1
Solanum lycopersicum
Solyc01g090370.1
I
0.700
Solyc05g050790.1
Solanum lycopersicum
Solyc05g050790.1
I
0.700
LPERR05G21530
Leersia perrieri
LPERR05G21530
I
0.700
OPUNC08G19980
Oryza punctata
OPUNC08G19980
I
0.699
Bostr.25993s0288
Boechera stricta
Bostr.25993s0288
I
0.698
Solyc01g090300.2
Solanum lycopersicum
Solyc01g090300.2
I
0.697
Lus10013959.g
Linum usitatissimum
Lus10013959.g
I
0.697
mgf021756m
Mimulus guttatus
mgf021756m
I
0.697
OB05G33440
Oryza brachyantha
OB05G33440
I
0.697
Pavir.J05942
Panicum virgatum
Pavir.J05942
I
0.696
AMTR_s00016p00092590
Amborella trichopoda
AMTR_s00016p00092590
I
0.694
GRMZM2G085964
Zea mays
GRMZM2G085964
I
0.694
OS02G0764700
Oryza sativa
OS02G0764700
I
0.694
PGSC0003DMG400026049
Solanum tuberosum
PGSC0003DMG400026049
I
0.694
TCM_005704
Theobroma cacao
TCM_005704
I
0.693
PGSC0003DMG400023593
Solanum tuberosum
PGSC0003DMG400023593
I
0.693
Si013986m.g
Setaria italica
Si013986m.g
I
0.693
Solyc04g012050.2
Solanum lycopersicum
Solyc04g012050.2
I
0.693
PGSC0003DMG400026046
Solanum tuberosum
PGSC0003DMG400026046
I
0.692
LPERR05G10570
Leersia perrieri
LPERR05G10570
I
0.691
GSMUA_Achr10G12150_001
Musa acuminata
GSMUA_Achr10G12150_001
I
0.691
Eucgr.K00128
Eucalyptus grandis
Eucgr.K00128
I
0.691
Cucsa.255330
Cucumis sativus
Cucsa.255330
I
0.691
Pavir.Ca00939
Panicum virgatum
Pavir.Ca00939
I
0.691
Pavir.J34156
Panicum virgatum
Pavir.J34156
I
0.690
Si030810m.g
Setaria italica
Si030810m.g
I
0.690
Si024258m.g
Setaria italica
Si024258m.g
I
0.690
Eucgr.G00392
Eucalyptus grandis
Eucgr.G00392
I
0.690
VIT_15s0021g01610
Vitis vinifera
VIT_15s0021g01610
I
0.690
VIT_15s0021g01600
Vitis vinifera
VIT_15s0021g01600
I
0.690
VIT_15s0021g01590
Vitis vinifera
VIT_15s0021g01590
I
0.690
PRUPE_ppa011097mg
Prunus persica
PRUPE_ppa011097mg
I
0.689
MDP0000390121
Malus domestica
MDP0000390121
I
0.689
Solyc02g090790.1
Solanum lycopersicum
Solyc02g090790.1
I
0.689
F775_22380
Aegilops tauschii
F775_22380
I
0.689
Pm007084
Prunus mume
Pm007084
I
0.689
OPUNC05G23490
Oryza punctata
OPUNC05G23490
I
0.689
Rap2.6L
Vitis vinifera
VIT_17s0000g00200
I
0.689
VIT_01s0150g00120
Vitis vinifera
VIT_01s0150g00120
I
0.689
GRMZM2G425798
Zea mays
GRMZM2G425798
I
0.688
BGIOSGA017558
Oryza indica
BGIOSGA017558
I
0.688
GSMUA_Achr1G00490_001
Musa acuminata
GSMUA_Achr1G00490_001
I
0.688
GLYMA03G26310
Glycine max
GLYMA03G26310
I
0.688
Traes_2BL_E5F50498D
Triticum aestivum
Traes_2BL_E5F50498D
I
0.688
BGIOSGA016313
Oryza indica
BGIOSGA016313
I
0.688
GSMUA_Achr6G08140_001
Musa acuminata
GSMUA_Achr6G08140_001
I
0.688
Solyc10g050970.1
Solanum lycopersicum
Solyc10g050970.1
I
0.688
Traes_2AL_6B6086A7C
Triticum aestivum
Traes_2AL_6B6086A7C
I
0.688
Si010289m.g
Setaria italica
Si010289m.g
I
0.688
Traes_2DL_2536A1C8C
Triticum aestivum
Traes_2DL_2536A1C8C
I
0.688
orange1.1g044584m.g
Citrus sinensis
orange1.1g044584m.g
I
0.688
ORGLA02G0353700
Oryza glaberrima
ORGLA02G0353700
I
0.688
OPUNC04G09060
Oryza punctata
OPUNC04G09060
I
0.688
ONIVA05G27810
Oryza nivara
ONIVA05G27810
I
0.688
ORGLA04G0080400
Oryza glaberrima
ORGLA04G0080400
I
0.688
ORGLA05G0224000
Oryza glaberrima
ORGLA05G0224000
I
0.688
GRMZM2G087059
Zea mays
GRMZM2G087059
I
0.688
LPERR04G07810
Leersia perrieri
LPERR04G07810
I
0.688
BRADI5G08380
Brachypodium distachyon
BRADI5G08380
I
0.688
ONIVA04G08960
Oryza nivara
ONIVA04G08960
I
0.688
F775_31480
Aegilops tauschii
F775_31480
I
0.688
OBART05G25910
Oryza barthii
OBART05G25910
I
0.688
OB04G18180
Oryza brachyantha
OB04G18180
I
0.688
OGLUM04G10750
Oryza glumaepatula
OGLUM04G10750
I
0.688
OMERI03G30010
Oryza meridionalis
OMERI03G30010
I
0.688
OGLUM05G27510
Oryza glumaepatula
OGLUM05G27510
I
0.688
ORUFI04G12250
Oryza rufipogon
ORUFI04G12250
I
0.688
Pavir.J34881
Panicum virgatum
Pavir.J34881
I
0.688
ORUFI05G27790
Oryza rufipogon
ORUFI05G27790
I
0.688
Pavir.Gb01735
Panicum virgatum
Pavir.Gb01735
I
0.688
OS04G0398000
Oryza sativa
OS04G0398000
I
0.688
Ca_02325
Cicer arietinum
Ca_02325
I
0.687
Bo9g014660
Brassica oleracea
Bo9g014660
I
0.687
Bra035919
Brassica rapa
Bra035919
I
0.687
Bo7g040810
Brassica oleracea
Bo7g040810
I
0.687
Bra014925
Brassica rapa
Bra014925
I
0.687
PGSC0003DMG400041045
Solanum tuberosum
PGSC0003DMG400041045
I
0.686
Bo4g195220
Brassica oleracea
Bo4g195220
I
0.686
PGSC0003DMG400036566
Solanum tuberosum
PGSC0003DMG400036566
I
0.686
PK26398.1
Cannabis sativa
PK26398.1
I
0.686
Bra004873
Brassica rapa
Bra004873
I
0.686
Bra037630
Brassica rapa
Bra037630
I
0.686
ERF13
Arabidopsis thaliana
AT2G44840
D
0.686
Ciclev10005787m.g
Citrus clementina
Ciclev10005787m.g
I
0.686
ATERF13
Arabidopsis lyrata
scaffold_403422.1
I
0.686
Bo4g024140
Brassica oleracea
Bo4g024140
I
0.686
orange1.1g043184m.g
Citrus sinensis
orange1.1g043184m.g
I
0.686
Thhalv10001758m.g
Eutrema salsugineum
Thhalv10001758m.g
I
0.686
Carubv10023967m.g
Capsella rubella
Carubv10023967m.g
I
0.686
Solyc01g090310.2
Solanum lycopersicum
Solyc01g090310.2
I
0.686
Cagra.0239s0035
Capsella grandiflora
Cagra.0239s0035
I
0.686
Bra006195
Brassica rapa
Bra006195
I
0.685
GLYMA07G33511
Glycine max
GLYMA07G33511
I
0.685
Cla021384
Citrullus lanatus
Cla021384
I
0.685
OPUNC02G31100
Oryza punctata
OPUNC02G31100
I
0.685
Thhalv10022108m.g
Eutrema salsugineum
Thhalv10022108m.g
I
0.685
evm.TU.supercontig_38.79
Carica papaya
evm.TU.supercontig_38.79
I
0.685
Bo3g009120
Brassica oleracea
Bo3g009120
I
0.685
A4F249_TOBAC
Nicotiana tabacum
A4F249_TOBAC
D
0.684
gene04916-v1.0-hybrid
Fragaria vesca
gene04916-v1.0-hybrid
I
0.684
Bo1g102220
Brassica oleracea
Bo1g102220
I
0.684
Pm017698
Prunus mume
Pm017698
I
0.684
VIT_07s0005g03280
Vitis vinifera
VIT_07s0005g03280
I
0.684
POPTR_0014s04640
Populus trichocarpa
POPTR_0014s04640
I
0.684
PRUPE_ppa023698mg
Prunus persica
PRUPE_ppa023698mg
I
0.684
Bra023748
Brassica rapa
Bra023748
I
0.684
MDP0000135205
Malus domestica
MDP0000135205
I
0.683
Si023329m.g
Setaria italica
Si023329m.g
I
0.683
Eucgr.B03559
Eucalyptus grandis
Eucgr.B03559
I
0.683
evm.TU.supercontig_44.73
Carica papaya
evm.TU.supercontig_44.73
I
0.683
MDP0000122665
Malus domestica
MDP0000122665
I
0.683
mgf022451m
Mimulus guttatus
mgf022451m
I
0.683
GSMUA_Achr5G12530_001
Musa acuminata
GSMUA_Achr5G12530_001
I
0.683
PRUPE_ppb014367mg
Prunus persica
PRUPE_ppb014367mg
I
0.683
POPTR_0001s12990
Populus trichocarpa
POPTR_0001s12990
I
0.683
Gorai.008G219300
Gossypium raimondii
Gorai.008G219300
I
0.683
PRUPE_ppa016903mg
Prunus persica
PRUPE_ppa016903mg
I
0.683
Pm017696
Prunus mume
Pm017696
I
0.683
chr1.LjT14I13.10.nd
Lotus japonicus
chr1.LjT14I13.10.nd
I
0.683
Solyc06g068830.1
Solanum lycopersicum
Solyc06g068830.1
I
0.683
SapurV1A.0340s0060
Salix purpurea
SapurV1A.0340s0060
I
0.683
PGSC0003DMG400016004
Solanum tuberosum
PGSC0003DMG400016004
I
0.683
PGSC0003DMG400025582
Solanum tuberosum
PGSC0003DMG400025582
I
0.683
evm.TU.supercontig_101.15
Carica papaya
evm.TU.supercontig_101.15
I
0.682
GLYMA08G28835
Glycine max
GLYMA08G28835
I
0.682
mgf025885m
Mimulus guttatus
mgf025885m
I
0.682
GLYMA18G51680
Glycine max
GLYMA18G51680
I
0.682
A4F248_TOBAC
Nicotiana tabacum
A4F248_TOBAC
D
0.682
Ca_00360
Cicer arietinum
Ca_00360
I
0.681
Sb02g029550
Sorghum bicolor
Sb02g029550
I
0.681
Gorai.005G197100
Gossypium raimondii
Gorai.005G197100
I
0.681
Gorai.012G125700
Gossypium raimondii
Gorai.012G125700
I
0.681
MDP0000316694
Malus domestica
MDP0000316694
I
0.681
Pavir.Da00220
Panicum virgatum
Pavir.Da00220
I
0.681
PK12040.1
Cannabis sativa
PK12040.1
I
0.681
gene21167-v1.0-hybrid
Fragaria vesca
gene21167-v1.0-hybrid
I
0.681
cassava14904.m1
Manihot esculenta
cassava14904.m1
I
0.681
cassava16948.m1
Manihot esculenta
cassava16948.m1
I
0.681
cassava16956.m1
Manihot esculenta
cassava16956.m1
I
0.681
Solyc05g052030.1
Solanum lycopersicum
Solyc05g052030.1
I
0.681
GRMZM2G131281
Zea mays
GRMZM2G131281
I
0.681
30128.m008556
Ricinus communis
30128.m008556
I
0.681
VIT_15s0021g01630
Vitis vinifera
VIT_15s0021g01630
I
0.681
TCM_008334
Theobroma cacao
TCM_008334
I
0.681
cassava19883.m1
Manihot esculenta
cassava19883.m1
I
0.680
MDP0000175375
Malus domestica
MDP0000175375
I
0.680
GLYMA20G33800
Glycine max
GLYMA20G33800
I
0.680
SapurV1A.0124s0170
Salix purpurea
SapurV1A.0124s0170
I
0.680
SapurV1A.0499s0150
Salix purpurea
SapurV1A.0499s0150
I
0.680
GLYMA10G33810
Glycine max
GLYMA10G33810
I
0.680
Bra016063
Brassica rapa
Bra016063
I
0.680
XM_002304604.1
Populus trichocarpa
POPTR_0003s16090
I
0.680
Eucgr.G00397
Eucalyptus grandis
Eucgr.G00397
I
0.680
gene04913-v1.0-hybrid
Fragaria vesca
gene04913-v1.0-hybrid
I
0.680
Bo6g115850
Brassica oleracea
Bo6g115850
I
0.680
Eucgr.A01091
Eucalyptus grandis
Eucgr.A01091
I
0.680
GRMZM2G050851
Zea mays
GRMZM2G050851
I
0.679
Pavir.Fb01507
Panicum virgatum
Pavir.Fb01507
I
0.679
Pm019544
Prunus mume
Pm019544
I
0.679
Pm017699
Prunus mume
Pm017699
I
0.679
Pavir.J17283
Panicum virgatum
Pavir.J17283
I
0.679
30174.m008755
Ricinus communis
30174.m008755
I
0.679
MTR_7g020980
Medicago truncatula
MTR_7g020980
I
0.679
Solyc02g077360.1
Solanum lycopersicum
Solyc02g077360.1
I
0.679
Bo7g077390
Brassica oleracea
Bo7g077390
I
0.679
MDP0000517262
Malus domestica
MDP0000517262
I
0.679
chr5.CM0909.360.nc
Lotus japonicus
chr5.CM0909.360.nc
I
0.679
PRUPE_ppa022802mg
Prunus persica
PRUPE_ppa022802mg
I
0.679
POPTR_0014s04610
Populus trichocarpa
POPTR_0014s04610
I
0.679
Bostr.13129s0205
Boechera stricta
Bostr.13129s0205
I
0.678
Bo9g175610
Brassica oleracea
Bo9g175610
I
0.678
PK01935.1
Cannabis sativa
PK01935.1
I
0.678
Bra028690
Brassica rapa
Bra028690
I
0.678
cassava21353.m1
Manihot esculenta
cassava21353.m1
I
0.678
Bra009250
Brassica rapa
Bra009250
I
0.678
Cagra.2925s0026
Capsella grandiflora
Cagra.2925s0026
I
0.678
Thhalv10014666m.g
Eutrema salsugineum
Thhalv10014666m.g
I
0.678
ERF106
Arabidopsis thaliana
AT5G07580
D
0.678
Pavir.J03216
Panicum virgatum
Pavir.J03216
I
0.678
scaffold_600764.1
Arabidopsis lyrata
scaffold_600764.1
I
0.678
Carubv10001989m.g
Capsella rubella
Carubv10001989m.g
I
0.678
TCM_005706
Theobroma cacao
TCM_005706
I
0.677
Bra003883
Brassica rapa
Bra003883
I
0.677
Bo6g091540
Brassica oleracea
Bo6g091540
I
0.677
PRUPE_ppa025748mg
Prunus persica
PRUPE_ppa025748mg
I
0.677
gene04917-v1.0-hybrid
Fragaria vesca
gene04917-v1.0-hybrid
I
0.677
Solyc02g090800.1
Solanum lycopersicum
Solyc02g090800.1
I
0.677
Pm017700
Prunus mume
Pm017700
I
0.677
Si008428m.g
Setaria italica
Si008428m.g
I
0.677