Pavir.Ab02603 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ab02603 T009350_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q8LKX0_MAIZE
M09722_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DBF2_01
0.778 0.940
ERF035
M06631_2.00
Arabidopsis thaliana
YCACCGACANWDNH

DNHWNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
AT3G60490_col_a
0.735 0.880
ERF035
M06632_2.00
Arabidopsis thaliana
NNBCACCGACAHWNNN

NNNWDTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a
0.735 0.880
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD

HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.734 0.900
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH

DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.734 0.900
ERF043
M01627_2.00
Arabidopsis thaliana
YRCCGACA

TGTCGGYR
PBM
Weirauch et al.(2014)
pTH7413
0.722 0.860
ERF043
M06651_2.00
Arabidopsis thaliana
NNYCACCGACANHNNN

NNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a
0.722 0.860
ERF043
M06652_2.00
Arabidopsis thaliana
NNYCACCGACANHNNH

DNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_col
0.722 0.860
Q5MAR7_BRANA
M09742_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII1_01
0.714 0.900
Q3HS44_BRANA
M09741_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII2_01
0.714 0.900
Q3HS43_BRANA
M09740_2.00
Brassica napus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREBIII3_01
0.714 0.900
ERF037
M00843_2.00
Arabidopsis thaliana
NRCCGACRN

NYGTCGGYN
PBM
Franco-Zorrilla et al.(2014)
At1g77200
0.709 0.880
ERF037
M06599_2.00
Arabidopsis thaliana
YCRCCGACAHHNNH

DNNDDTGTCGGYGR
Dap-seq
OMalley et al.(2016)
AT1G77200_col_a
0.709 0.880
ERF037
M06600_2.00
Arabidopsis thaliana
NNYACCGACAHN

NDTGTCGGTRNN
Dap-seq
OMalley et al.(2016)
AT1G77200_colamp_a
0.709 0.880
ERF039
M01620_2.00
Arabidopsis thaliana
NNRCCGACDN

NHGTCGGYNN
PBM
Weirauch et al.(2014)
pTH8101
0.708 0.900
ERF039
M06635_2.00
Arabidopsis thaliana
HNNHDYCRCCGMCRN

NYGKCGGYGRHDNND
Dap-seq
OMalley et al.(2016)
At4g16750_col_a
0.708 0.900
ERF039
M06636_2.00
Arabidopsis thaliana
NNNNNNYCACCGACAHH

DDTGTCGGTGRNNNNNN
Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a
0.708 0.900
ERF038
M06608_2.00
Arabidopsis thaliana
NHNHHDYCRCCGACA

TGTCGGYGRHDDNDN
Dap-seq
OMalley et al.(2016)
ERF38_col_a
0.708 0.880
AT3G16280
M06618_2.00
Arabidopsis thaliana
NDNCACCGACANHN

NDNTGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
AT3G16280_col_a
0.689 0.840
AT3G16280
M06619_2.00
Arabidopsis thaliana
BCACCGACAHWNNN

NNNWDTGTCGGTGV
Dap-seq
OMalley et al.(2016)
AT3G16280_colamp_a
0.689 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab02603.1.p AP2 61 112

Links

Other AP2 family TFs
Other Panicum virgatum TFs

414 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O7_04026 Cladophialophora yegresii A1O7_04026 I 0.000
PV10_00514 Exophiala mesophila PV10_00514 I 0.000
G647_04666 Cladophialophora carrionii G647_04666 I 0.000
Z517_11712 Fonsecaea pedrosoi Z517_11712 I 0.000
Z518_10184 Rhinocladiella mackenziei Z518_10184 I 0.000
PV04_05279 Capronia semiimmersa PV04_05279 I 0.000
A1O1_00801 Capronia coronata A1O1_00801 I 0.000
PV04_08823 Capronia semiimmersa PV04_08823 N 0.000
PABG_00768 Paracoccidioides brasiliensis PABG_00768 N 0.000
PV08_08880 Exophiala spinifera PV08_08880 N 0.000
PV07_00882 Cladophialophora immunda PV07_00882 N 0.000
PV06_09822 Exophiala oligosperma PV06_09822 N 0.000
PV05_00997 Exophiala xenobiotica PV05_00997 N 0.000
PDE_02184 Penicillium oxalicum PDE_02184 N 0.000
PMAA_049200 Talaromyces marneffei PMAA_049200 N 0.000
HMPREF1541_03654 Cyphellophora europaea HMPREF1541_03654 N 0.000
PV10_04925 Exophiala mesophila PV10_04925 N 0.000
PV11_02484 Exophiala sideris PV11_02484 N 0.000
PVAR5_4548 Byssochlamys spectabilis PVAR5_4548 N 0.000
PMAA_049200 Penicillium marneffei PMAA_049200 N 0.000
fgenesh1_pm.00771_#_78 Aspergillus carbonarius fgenesh1_pm.00771_#_78 N 0.000
Z519_12024 Cladophialophora bantiana Z519_12024 N 0.000
Z519_01916 Cladophialophora bantiana Z519_01916 N 0.000
Z518_10852 Rhinocladiella mackenziei Z518_10852 N 0.000
Z517_05164 Fonsecaea pedrosoi Z517_05164 N 0.000
UREG_02425 Uncinocarpus reesii UREG_02425 N 0.000
TSTA_039140 Talaromyces stipitatus TSTA_039140 N 0.000
TRV_02239 Trichophyton verrucosum TRV_02239 N 0.000
TESG_03991 Trichophyton tonsurans TESG_03991 N 0.000
TEQG_07260 Trichophyton equinum TEQG_07260 N 0.000
PAAG_03715 Paracoccidioides sp lutzii PAAG_03715 N 0.000
MGYG_07575 Microsporum gypseum MGYG_07575 N 0.000
HMPREF1541_09227 Cyphellophora europaea HMPREF1541_09227 N 0.000
CADANGAG00005435 Aspergillus niger CADANGAG00005435 N 0.000
AFUA_7G05960 Aspergillus fumigatus CADAFUAG00009660 N 0.000
CADAFLAG00000474 Aspergillus flavus CADAFLAG00000474 N 0.000
ACLA_007650 Aspergillus clavatus CADACLAG00000450 N 0.000
BDDG_08162 Blastomyces dermatitidis BDDG_08162 N 0.000
ARB_01120 Arthroderma benhamiae ARB_01120 N 0.000
A1O7_08287 Cladophialophora yegresii A1O7_08287 N 0.000
A1O5_03005 Cladophialophora psammophila A1O5_03005 N 0.000
A1O5_01498 Cladophialophora psammophila A1O5_01498 N 0.000
A1O3_00914 Capronia epimyces A1O3_00914 N 0.000
A1O1_02509 Capronia coronata A1O1_02509 N 0.000
ANIA_06733 Aspergillus nidulans CADANIAG00007526 N 0.000
CADAORAG00002457 Aspergillus oryzae CADAORAG00002457 N 0.000
NFIA_027200 Neosartorya fischeri CADNFIAG00002534 N 0.000
CIMG_08163 Coccidioides immitis CIMG_08163 N 0.000
HMPREF1120_02238 Exophiala dermatitidis HMPREF1120_02238 N 0.000
HCBG_04319 Histoplasma capsulatum HCBG_04319 N 0.000
H105_03339 Trichophyton soudanense H105_03339 N 0.000
H102_03320 Trichophyton rubrum H102_03320 N 0.000
H101_04104 Trichophyton interdigitale H101_04104 N 0.000
G647_07244 Cladophialophora carrionii G647_07244 N 0.000
EURHEDRAFT_512897 Aspergillus ruber EURHEDRAFT_512897 N 0.000
EPUS_02224 Endocarpon pusillum EPUS_02224 N 0.000
DRE_04581 Drechslerella stenobrocha DRE_04581 N 0.000
CPC735_021860 Coccidioides posadasii CPC735_021860 N 0.000
MCYG_02260 Microsporum canis MCYG_02260 N 0.000