Pavir.Ba03394 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ba03394 T009369_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2.7
M00845_2.00 		Arabidopsis thaliana
KRCGRGGD
HCCYCGYM		 PBM
Franco-Zorrilla et al.(2014)
TOE1 		0.834 0.939
Q9XHD4_PETHY
M09737_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2A_01 		0.832 0.919
Q9XHD3_PETHY
M09736_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2B_01 		0.820 0.929
P93632_MAIZE
M09712_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GL15_01 		0.788 0.818
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba03394.1.p AP2 143 193
Pavir.Ba03394.1.p AP2 235 286

Links

Other AP2 family TFs
Other Panicum virgatum TFs

241 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si029636m.g Setaria italica Si029636m.g I 0.865
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.865
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.865
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.860
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.860
OS07G0235800 Oryza sativa OS07G0235800 I 0.860
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.860
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.860
OBART07G08110 Oryza barthii OBART07G08110 I 0.860
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.860
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.860
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.860
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.860
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.859
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.858
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.856
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.856
Si036068m.g Setaria italica Si036068m.g I 0.856
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.856
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.856
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.853
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.853
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.853
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.853
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.853
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.853
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.850
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.850
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.849
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.846
OB03G45870 Oryza brachyantha OB03G45870 I 0.845
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.844
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.843
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.841
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.841
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.840
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.840
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.840
Cla018124 Citrullus lanatus Cla018124 I 0.840
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.839
Ca_02499 Cicer arietinum Ca_02499 I 0.839
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.839
MDP0000200319 Malus domestica MDP0000200319 I 0.839
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.838
TCM_022077 Theobroma cacao TCM_022077 I 0.838
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.838
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.838
PK07183.1 Cannabis sativa PK07183.1 I 0.838
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.838
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.838
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.838
28752.m000339 Ricinus communis 28752.m000339 I 0.838
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.837
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.837
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.837
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.837
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.837
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.837
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.837
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.837
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.837
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.837
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.837
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.837
OS05G0121600 Oryza sativa OS05G0121600 I 0.837
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.837
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.837
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.837
Pm002492 Prunus mume Pm002492 I 0.837
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.837
Si025305m.g Setaria italica Si025305m.g I 0.837
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.837
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.837
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.837
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.836
TCM_000665 Theobroma cacao TCM_000665 I 0.836
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.836
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.836
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.836
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.835
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.834
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.834
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.834
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.834
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.834
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.834
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.834
Bo4g070350 Brassica oleracea Bo4g070350 I 0.834
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.834
Bra011939 Brassica rapa Bra011939 I 0.834
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.834
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.833
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.833
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.833
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.833
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.833
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.833
PK02403.1 Cannabis sativa PK02403.1 I 0.833
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.833
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.833
Cla000716 Citrullus lanatus Cla000716 I 0.833
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.833
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.833
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.833
29805.m001494 Ricinus communis 29805.m001494 I 0.833
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.833
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.833
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.832
Pm000974 Prunus mume Pm000974 I 0.832
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.832
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.832
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.832
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.832
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.832
Bra017809 Brassica rapa Bra017809 I 0.832
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.832
Ca_09295 Cicer arietinum Ca_09295 I 0.832
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.832
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.832
Bo7g118400 Brassica oleracea Bo7g118400 I 0.832
mgf021945m Mimulus guttatus mgf021945m I 0.832
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.832
mgf009315m Mimulus guttatus mgf009315m I 0.832
Bra011741 Brassica rapa Bra011741 I 0.832
MDP0000181606 Malus domestica MDP0000181606 I 0.832
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.832
AP2 Arabidopsis thaliana AT4G36920 I 0.832
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.832
Bo1g004960 Brassica oleracea Bo1g004960 I 0.832
F775_32962 Aegilops tauschii F775_32962 I 0.831
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.831
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.831
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.831
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.831
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.831
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.831
TCM_042000 Theobroma cacao TCM_042000 I 0.831
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.831
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.831
Ca_14618 Cicer arietinum Ca_14618 I 0.830
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.830
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.830
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.830
Si012635m.g Setaria italica Si012635m.g I 0.829
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.829
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.829
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.829
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.829
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.829
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.829
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.829
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.829
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.829
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.829
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.828
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.827
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.825
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.823
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.823
29169.m000017 Ricinus communis 29169.m000017 I 0.822
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.822
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.821
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.821
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.820
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.820
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.820
Ca_12010 Cicer arietinum Ca_12010 I 0.819
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.819
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.819
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.819
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.819
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.819
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.818
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.817
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.816
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.816
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.816
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.816
Pm030172 Prunus mume Pm030172 I 0.816
MDP0000137561 Malus domestica MDP0000137561 I 0.815
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.814
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.814
mgf010466m Mimulus guttatus mgf010466m I 0.814
mgf005133m Mimulus guttatus mgf005133m I 0.814
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.813
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.811
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.811
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.811
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.810
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.810
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.810
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.810
OB06G29960 Oryza brachyantha OB06G29960 I 0.810
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.810
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.810
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.810
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.809
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.809
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.806
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.803
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.803
MDP0000163645 Malus domestica MDP0000163645 I 0.800
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.800
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.800
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.799
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.798
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.796
OS03G0818800 Oryza sativa OS03G0818800 I 0.796
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.796
Cla020549 Citrullus lanatus Cla020549 I 0.795
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.794
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.794
Bra012139 Brassica rapa Bra012139 I 0.792
Bo7g064000 Brassica oleracea Bo7g064000 I 0.792
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.792
P93632_MAIZE Zea mays P93632_MAIZE D 0.788
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.788
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.786
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.786
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.784
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.784
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.783
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.782
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.782
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.782
TOE3 Arabidopsis thaliana AT5G67180 I 0.782
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.782
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.782
Cla018549 Citrullus lanatus Cla018549 I 0.781
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.780
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.779
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.776
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.773
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.773
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.768
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.701
POPTR_0010s22320 Populus trichocarpa POPTR_0010s22320 I 0.689
Solyc11g072600.1 Solanum lycopersicum Solyc11g072600.1 I 0.689
PK14490.1 Cannabis sativa PK14490.1 I 0.689
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.687
Si006371m.g Setaria italica Si006371m.g I 0.677