Pavir.Bb02294 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Bb02294 T009383_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CRF3
M01633_2.00
Arabidopsis thaliana
NNGCCRNNN

NNNYGGCNN
PBM
Weirauch et al.(2014)
pTH8110
0.694 0.714
CRF2
M01622_2.00
Arabidopsis thaliana
SCGCCGCC

GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8680
0.680 0.714
CRF4
M01626_2.00
Arabidopsis thaliana
SCGCCGCC

GGCGGCGS
PBM
Weirauch et al.(2014)
pTH8261
0.679 0.694
CRF4
M06645_2.00
Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN

NRGHDDHDGYGGCGGCGGHKV
Dap-seq
OMalley et al.(2016)
CRF4_col_a
0.679 0.694
CRF4
M06646_2.00
Arabidopsis thaliana
YCDYCGCCGCCGYYD

HRRCGGCGGCGRHGR
Dap-seq
OMalley et al.(2016)
CRF4_colamp_a
0.679 0.694
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Bb02294.1.p AP2 97 147

Links

Other AP2 family TFs
Other Panicum virgatum TFs

104 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GRMZM2G105266 Zea mays GRMZM2G105266 I 0.740
Si022788m.g Setaria italica Si022788m.g I 0.739
Pavir.Ia04256 Panicum virgatum Pavir.Ia04256 I 0.734
MLOC_40486 Hordeum vulgare MLOC_40486 I 0.728
TCM_042300 Theobroma cacao TCM_042300 I 0.707
GSMUA_Achr11G19880_001 Musa acuminata GSMUA_Achr11G19880_001 I 0.701
VIT_06s0004g08190 Vitis vinifera VIT_06s0004g08190 I 0.701
BRADI2G31480 Brachypodium distachyon BRADI2G31480 I 0.699
SapurV1A.1111s0070 Salix purpurea SapurV1A.1111s0070 I 0.697
PRUPE_ppa022995mg Prunus persica PRUPE_ppa022995mg I 0.697
PRUPE_ppa025495mg Prunus persica PRUPE_ppa025495mg I 0.697
MDP0000190504 Malus domestica MDP0000190504 I 0.697
Pm000232 Prunus mume Pm000232 I 0.697
evm.TU.supercontig_2.277 Carica papaya evm.TU.supercontig_2.277 I 0.696
GSMUA_Achr7G21980_001 Musa acuminata GSMUA_Achr7G21980_001 I 0.696
MDP0000854039 Malus domestica MDP0000854039 I 0.694
Cagra.0084s0074 Capsella grandiflora Cagra.0084s0074 I 0.694
Bra003068 Brassica rapa Bra003068 I 0.694
Bostr.26833s0952 Boechera stricta Bostr.26833s0952 I 0.694
Bo9g111050 Brassica oleracea Bo9g111050 I 0.694
MDP0000308379 Malus domestica MDP0000308379 I 0.694
orange1.1g043400m.g Citrus sinensis orange1.1g043400m.g I 0.694
CRF3 Arabidopsis lyrata scaffold_801806.1 I 0.694
Ciclev10002183m.g Citrus clementina Ciclev10002183m.g I 0.694
Carubv10026682m.g Capsella rubella Carubv10026682m.g I 0.694
Bra022643 Brassica rapa Bra022643 I 0.694
Bo2g045930 Brassica oleracea Bo2g045930 I 0.694
CRF3 Arabidopsis thaliana AT5G53290 D 0.694
Thhalv10013898m.g Eutrema salsugineum Thhalv10013898m.g I 0.694
GLYMA02G40320 Glycine max GLYMA02G40320 I 0.693
POPTR_0015s06070 Populus trichocarpa POPTR_0015s06070 I 0.692
SapurV1A.1017s0070 Salix purpurea SapurV1A.1017s0070 I 0.692
Cagra.16778s0005 Capsella grandiflora Cagra.16778s0005 I 0.690
Pm013049 Prunus mume Pm013049 I 0.690
28641.m000082 Ricinus communis 28641.m000082 I 0.689
cassava27467.m1 Manihot esculenta cassava27467.m1 I 0.688
CRF1 Arabidopsis lyrata fgenesh2_kg.6__3086__AT4G11140.1 I 0.688
Aquca_037_00045 Aquilegia coerulea Aquca_037_00045 I 0.688
CRF1 Arabidopsis thaliana AT4G11140 I 0.688
gene13118-v1.0-hybrid Fragaria vesca gene13118-v1.0-hybrid I 0.688
SapurV1A.0215s0310 Salix purpurea SapurV1A.0215s0310 I 0.687
Bostr.7867s0626 Boechera stricta Bostr.7867s0626 I 0.687
SapurV1A.4828s0010 Salix purpurea SapurV1A.4828s0010 I 0.687
Carubv10001539m.g Capsella rubella Carubv10001539m.g I 0.687
Bostr.25463s0212 Boechera stricta Bostr.25463s0212 I 0.686
mgf018116m Mimulus guttatus mgf018116m I 0.686
Gorai.008G271200 Gossypium raimondii Gorai.008G271200 I 0.686
SapurV1A.1442s0010 Salix purpurea SapurV1A.1442s0010 I 0.686
SapurV1A.2151s0020 Salix purpurea SapurV1A.2151s0020 I 0.686
Thhalv10029132m.g Eutrema salsugineum Thhalv10029132m.g I 0.686
PK28823.1 Cannabis sativa PK28823.1 I 0.686
SapurV1A.1043s0120 Salix purpurea SapurV1A.1043s0120 I 0.686
orange1.1g047455m.g Citrus sinensis orange1.1g047455m.g I 0.686
Eucgr.A02669 Eucalyptus grandis Eucgr.A02669 I 0.686
Eucgr.K00321 Eucalyptus grandis Eucgr.K00321 I 0.686
Gorai.006G200400 Gossypium raimondii Gorai.006G200400 I 0.686
Cucsa.012850 Cucumis sativus Cucsa.012850 I 0.686
Ciclev10005220m.g Citrus clementina Ciclev10005220m.g I 0.686
cassava7228.valid.m1 Manihot esculenta cassava7228.valid.m1 I 0.686
Bo3g045150 Brassica oleracea Bo3g045150 I 0.686
Bo8g053000 Brassica oleracea Bo8g053000 I 0.686
Solyc03g007460.1 Solanum lycopersicum Solyc03g007460.1 I 0.686
Solyc06g051840.1 Solanum lycopersicum Solyc06g051840.1 I 0.686
TCM_015336 Theobroma cacao TCM_015336 I 0.686
Bra026295 Brassica rapa Bra026295 I 0.686
GLYMA11G02140 Glycine max GLYMA11G02140 I 0.686
PGSC0003DMG400036493 Solanum tuberosum PGSC0003DMG400036493 I 0.686
PGSC0003DMG400002350 Solanum tuberosum PGSC0003DMG400002350 I 0.686
POPTR_0012s01260 Populus trichocarpa POPTR_0012s01260 I 0.686
GSMUA_Achr5G27850_001 Musa acuminata GSMUA_Achr5G27850_001 I 0.686
Bra010389 Brassica rapa Bra010389 I 0.686
GLYMA04G41740 Glycine max GLYMA04G41740 I 0.686
GLYMA06G13040 Glycine max GLYMA06G13040 I 0.686
Cla004291 Citrullus lanatus Cla004291 I 0.686
30169.m006542 Ricinus communis 30169.m006542 I 0.686
GLYMA01G43350 Glycine max GLYMA01G43350 I 0.686
cassava32471.m1 Manihot esculenta cassava32471.m1 I 0.686
VIT_16s0050g02400 Vitis vinifera VIT_16s0050g02400 I 0.686
AMTR_s00097p00165740 Amborella trichopoda AMTR_s00097p00165740 I 0.686
Bo1g051080 Brassica oleracea Bo1g051080 I 0.686
mgf022434m Mimulus guttatus mgf022434m I 0.684
Thhalv10025693m.g Eutrema salsugineum Thhalv10025693m.g I 0.684
TCM_032408 Theobroma cacao TCM_032408 I 0.683
Gorai.009G355700 Gossypium raimondii Gorai.009G355700 I 0.683
Sb05g001280 Sorghum bicolor Sb05g001280 I 0.681
GLYMA03G41640 Glycine max GLYMA03G41640 I 0.681
CRF4 Arabidopsis lyrata scaffold_701473.1 I 0.681
CRF2 Arabidopsis thaliana AT4G23750 D 0.680
Aquca_011_00500 Aquilegia coerulea Aquca_011_00500 I 0.680
GLYMA19G44240 Glycine max GLYMA19G44240 I 0.679
Gorai.007G105600 Gossypium raimondii Gorai.007G105600 I 0.679
Cagra.1225s0103 Capsella grandiflora Cagra.1225s0103 I 0.679
Carubv10005229m.g Capsella rubella Carubv10005229m.g I 0.679
Gorai.007G105700 Gossypium raimondii Gorai.007G105700 I 0.679
Gorai.008G123400 Gossypium raimondii Gorai.008G123400 I 0.679
TCM_005203 Theobroma cacao TCM_005203 I 0.679
CRF4 Arabidopsis thaliana AT4G27950 D 0.679
cassava32306.m1 Manihot esculenta cassava32306.m1 I 0.678
GLYMA08G02460 Glycine max GLYMA08G02460 I 0.678
LPERR03G32900 Leersia perrieri LPERR03G32900 I 0.678
mgf019903m Mimulus guttatus mgf019903m I 0.677
GLYMA03G23330 Glycine max GLYMA03G23330 I 0.677
SapurV1A.2062s0030 Salix purpurea SapurV1A.2062s0030 I 0.677
POPTR_0019s15190 Populus trichocarpa POPTR_0019s15190 I 0.677