Pavir.Da00344 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Da00344 T009400_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PLT1
M06622_2.00
Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN

NNDYCTYGRDWWNCGTGHH
Dap-seq
OMalley et al.(2016)
PLT1_col_a
0.934 0.971
PLT1
M06623_2.00
Arabidopsis thaliana
DYDCRNWTYYCRAG

CTYGRRAWNYGHRH
Dap-seq
OMalley et al.(2016)
PLT1_colamp_a
0.934 0.971
Q6SA75_TOBAC
M09733_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_01
0.892 0.914
Q6SA75_TOBAC
M09734_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANTL_02
0.892 0.914
ANT
M02647_2.00
Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW

WDNRCHTBGGGAWNYGTGYNH
SELEX
Mathelier et al.(2014)
MA0571.1
0.889 0.914
ANT
M09705_2.00
Arabidopsis thaliana
CACRNWTCCCRAKG

CMTYGGGAWNYGTG
Transfac
Matys et al.(2006)
P$ANT_01
0.889 0.914
AIL7
M06688_2.00
Arabidopsis thaliana
CRNWTHYCRAG

CTYGRDAWNYG
Dap-seq
OMalley et al.(2016)
AIL7_col_a
0.853 0.886
AIL7
M06689_2.00
Arabidopsis thaliana
DCRNWTHYCRAG

CTYGRDAWNYGH
Dap-seq
OMalley et al.(2016)
AIL7_colamp_a
0.853 0.886
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Da00344.1.p AP2 129 189
Pavir.Da00344.1.p AP2 231 283

Links

Other AP2 family TFs
Other Panicum virgatum TFs

626 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGABI2DRAFT_197789 Agaricus bisporus AGABI2DRAFT_197789 N 0.000
fgeneshPB_pg.11__148 Phycomyces blakesleeanus fgeneshPB_pg.11__148 N 0.000
SERLA73DRAFT_66208 Serpula lacrymans SERLA73DRAFT_66208 N 0.000
PAXRUDRAFT_33927 Paxillus rubicundulus PAXRUDRAFT_33927 N 0.000
Moror_346 Moniliophthora roreri Moror_346 N 0.000
M413DRAFT_237712 Hebeloma cylindrosporum M413DRAFT_237712 N 0.000
HYDPIDRAFT_99864 Hydnomerulius pinastri HYDPIDRAFT_99864 N 0.000
HETIRDRAFT_181137 Heterobasidion irregulare HETIRDRAFT_181137 N 0.000
GALMADRAFT_233958 Galerina marginata GALMADRAFT_233958 N 0.000
FOMPIDRAFT_1085863 Fomitopsis pinicola FOMPIDRAFT_1085863 N 0.000
CC1G_03731 Coprinopsis cinerea CC1G_03731 N 0.000
BN946_scf185001.g47 Trametes cinnabarina BN946_scf185001.g47 N 0.000
gw1.1.1202.1 Heterobasidion annosum gw1.1.1202.1 N 0.000