Pavir.Db01224 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Db01224 T009412_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
WIN1
M01603_2.00
Arabidopsis thaliana
VCRCCGCNNN

NNNGCGGYGB
PBM
Weirauch et al.(2014)
pTH7566
0.813 0.961
ERF003
M06667_2.00
Arabidopsis thaliana
DYCDCCRCCGYMDHHDYHN

NDRHDDHKRCGGYGGHGRH
Dap-seq
OMalley et al.(2016)
ESE3_col_a
0.754 0.843
ERF003
M06668_2.00
Arabidopsis thaliana
HDYCKCCGCCGYHDH

DHDRCGGCGGMGRHD
Dap-seq
OMalley et al.(2016)
ESE3_colamp_a
0.754 0.843
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Db01224.1.p AP2 6 57

Links

Other AP2 family TFs
Other Panicum virgatum TFs

297 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BRADI1G11090 Brachypodium distachyon BRADI1G11090 N 0.000
MLOC_67940 Hordeum vulgare MLOC_67940 N 0.000
LPERR03G26000 Leersia perrieri LPERR03G26000 N 0.000
OBART03G31370 Oryza barthii OBART03G31370 N 0.000
OB03G38380 Oryza brachyantha OB03G38380 N 0.000
ORGLA03G0290200 Oryza glaberrima ORGLA03G0290200 N 0.000
OGLUM03G31610 Oryza glumaepatula OGLUM03G31610 N 0.000
SLR1 Oryza indica BGIOSGA013420 N 0.000
OMERI03G27970 Oryza meridionalis OMERI03G27970 N 0.000
ONIVA03G32670 Oryza nivara ONIVA03G32670 N 0.000
OPUNC03G28530 Oryza punctata OPUNC03G28530 N 0.000
ORUFI03G32650 Oryza rufipogon ORUFI03G32650 N 0.000
SLR1 Oryza sativa OS03G0707600 N 0.000
Pavir.Ib04357 Panicum virgatum Pavir.Ib04357 N 0.000
Pavir.Ia00840 Panicum virgatum Pavir.Ia00840 N 0.000
Si039400m.g Setaria italica Si039400m.g N 0.000
Sb01g010660 Sorghum bicolor Sb01g010660 N 0.000
Traes_4AL_77F4CC833 Triticum aestivum Traes_4AL_77F4CC833 N 0.000
Traes_4BL_EDA8441F6 Triticum aestivum Traes_4BL_EDA8441F6 N 0.000
Traes_4BS_2EE4988CD Triticum aestivum Traes_4BS_2EE4988CD N 0.000
GRMZM2G024973 Zea mays GRMZM2G024973 N 0.000
GRMZM2G144744 Zea mays GRMZM2G144744 N 0.000