Pavir.Fb02246 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Fb02246 T009457_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8GZQ2_MAIZE
M09720_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1A_02 		0.724 0.808
DREB1A
M09710_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1A_01 		0.692 0.769
DREB1A
M09711_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SED_Q2 		0.692 0.769
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb02246.1.p AP2 46 101

Links

Other AP2 family TFs
Other Panicum virgatum TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA08G0220100 Oryza glaberrima ORGLA08G0220100 I 0.790
GRMZM2G124011 Zea mays GRMZM2G124011 I 0.771
Pavir.Ba01281 Panicum virgatum Pavir.Ba01281 I 0.766
Pavir.J03892 Panicum virgatum Pavir.J03892 I 0.745
Pavir.J03893 Panicum virgatum Pavir.J03893 I 0.745
GRMZM2G069126 Zea mays GRMZM2G069126 I 0.743
LPERR09G12950 Leersia perrieri LPERR09G12950 I 0.737
Pavir.J27101 Panicum virgatum Pavir.J27101 I 0.736
Si031001m.g Setaria italica Si031001m.g I 0.736
Sb02g030320 Sorghum bicolor Sb02g030320 I 0.736
GRMZM2G069146 Zea mays GRMZM2G069146 I 0.735
Sb02g030340 Sorghum bicolor Sb02g030340 I 0.731
Sb02g030330 Sorghum bicolor Sb02g030330 I 0.730
Sb05g006275 Sorghum bicolor Sb05g006275 I 0.728
GRMZM2G124037 Zea mays GRMZM2G124037 I 0.724
Q8GZQ2_MAIZE Zea mays Q8GZQ2_MAIZE D 0.724
BRADI4G35650 Brachypodium distachyon BRADI4G35650 I 0.723
OPUNC09G15260 Oryza punctata OPUNC09G15260 I 0.721
GRMZM2G069082 Zea mays GRMZM2G069082 I 0.709
Pavir.J03891 Panicum virgatum Pavir.J03891 I 0.692
Pavir.Ba01280 Panicum virgatum Pavir.Ba01280 I 0.692
Si030998m.g Setaria italica Si030998m.g I 0.692
DREB1A Oryza indica BGIOSGA029415 I 0.692
OGLUM09G17430 Oryza glumaepatula OGLUM09G17430 I 0.692
OBART09G16830 Oryza barthii OBART09G16830 I 0.692
OBART09G16810 Oryza barthii OBART09G16810 I 0.692
OMERI09G12490 Oryza meridionalis OMERI09G12490 I 0.692
ONIVA09G17900 Oryza nivara ONIVA09G17900 I 0.692
ORUFI09G18210 Oryza rufipogon ORUFI09G18210 I 0.692
DREB1A Oryza sativa OS09G0522200 D 0.692
OPUNC09G15290 Oryza punctata OPUNC09G15290 I 0.692
F775_27111 Aegilops tauschii F775_27111 I 0.679
Traes_5BL_D16B19610 Triticum aestivum Traes_5BL_D16B19610 I 0.679