CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ga00931
(
Panicum virgatum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Pavir.Ga00931
T009463_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB1E
M09709_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_01
0.816
0.920
DREB1G
M01635_2.00
Oryza sativa
NYGCCGACAN
NTGTCGGCRN
PBM
Weirauch et al.(2014)
pTH8352
0.786
0.900
DREB1G
M09707_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1G_01
0.786
0.900
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT
ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.688
0.780
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.688
0.780
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.688
0.780
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.687
0.780
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.687
0.780
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.687
0.780
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.687
0.780
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.687
0.780
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.687
0.780
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ga00931.1.p
AP2
39
90
PVYKGVRSRNPGRWVCELREPHGRHRIWLGTFETAEMAARAHDVAALALRGR
Links
Other
AP2
family TFs
Other
Panicum virgatum
TFs
59 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Sb06g025900
Sorghum bicolor
Sb06g025900
I
0.840
Si011005m.g
Setaria italica
Si011005m.g
I
0.840
GRMZM2G042756
Zea mays
GRMZM2G042756
I
0.840
ONIVA04G20840
Oryza nivara
ONIVA04G20840
I
0.816
ORGLA04G0192900
Oryza glaberrima
ORGLA04G0192900
I
0.816
LPERR04G18190
Leersia perrieri
LPERR04G18190
I
0.816
OPUNC04G19970
Oryza punctata
OPUNC04G19970
I
0.816
OMERI04G18770
Oryza meridionalis
OMERI04G18770
I
0.816
ORUFI04G23890
Oryza rufipogon
ORUFI04G23890
I
0.816
DREB1E
Oryza indica
BGIOSGA016950
I
0.816
OBART04G22220
Oryza barthii
OBART04G22220
I
0.816
DREB1E
Oryza sativa
OS04G0572400
D
0.816
OGLUM04G22260
Oryza glumaepatula
OGLUM04G22260
I
0.816
ONIVA02G30790
Oryza nivara
ONIVA02G30790
I
0.786
ORUFI02G29230
Oryza rufipogon
ORUFI02G29230
I
0.786
Sb04g031950
Sorghum bicolor
Sb04g031950
I
0.786
Pavir.Aa00912
Panicum virgatum
Pavir.Aa00912
I
0.786
Pavir.Ab02685
Panicum virgatum
Pavir.Ab02685
I
0.786
OPUNC02G25480
Oryza punctata
OPUNC02G25480
I
0.786
DREB1G
Oryza sativa
OS02G0677300
D
0.786
GRMZM2G137341
Zea mays
GRMZM2G137341
I
0.786
OMERI02G26980
Oryza meridionalis
OMERI02G26980
I
0.786
LPERR02G22610
Leersia perrieri
LPERR02G22610
I
0.786
DREB1G
Oryza indica
BGIOSGA008804
I
0.786
OGLUM02G28340
Oryza glumaepatula
OGLUM02G28340
I
0.786
OBART02G27760
Oryza barthii
OBART02G27760
I
0.786
Si018262m.g
Setaria italica
Si018262m.g
I
0.776
BRADI3G51630
Brachypodium distachyon
BRADI3G51630
I
0.772
MLOC_75886
Hordeum vulgare
MLOC_75886
I
0.772
Aquca_012_00144
Aquilegia coerulea
Aquca_012_00144
I
0.725
Aquca_013_00435
Aquilegia coerulea
Aquca_013_00435
I
0.718
Aquca_013_00436
Aquilegia coerulea
Aquca_013_00436
I
0.716
Aquca_013_00434
Aquilegia coerulea
Aquca_013_00434
I
0.698
cassava18935.valid.m1
Manihot esculenta
cassava18935.valid.m1
I
0.690
DREB1C
Arabidopsis thaliana
AT4G25470
D
0.688
Bostr.15774s0346
Boechera stricta
Bostr.15774s0346
I
0.687
Cagra.0094s0011
Capsella grandiflora
Cagra.0094s0011
I
0.687
DREB1A
Arabidopsis thaliana
AT4G25480
D
0.687
DREB1D
Arabidopsis thaliana
AT5G51990
D
0.687
Carubv10027759m.g
Capsella rubella
Carubv10027759m.g
I
0.687
Thhalv10015252m.g
Eutrema salsugineum
Thhalv10015252m.g
I
0.687
Bra028290
Brassica rapa
Bra028290
I
0.687
CBF4
Arabidopsis lyrata
scaffold_801637.1
I
0.687
Bo9g104770
Brassica oleracea
Bo9g104770
I
0.687
Bostr.7867s0359
Boechera stricta
Bostr.7867s0359
I
0.683
Bostr.7867s0361
Boechera stricta
Bostr.7867s0361
I
0.683
Gorai.007G010100
Gossypium raimondii
Gorai.007G010100
I
0.683
30147.m014313
Ricinus communis
30147.m014313
I
0.683
POPTR_0012s13870
Populus trichocarpa
POPTR_0012s13870
I
0.683
cassava35062.m1
Manihot esculenta
cassava35062.m1
I
0.683
Cagra.28753s0001
Capsella grandiflora
Cagra.28753s0001
I
0.683
Carubv10005709m.g
Capsella rubella
Carubv10005709m.g
I
0.683
Solyc03g026270.1
Solanum lycopersicum
Solyc03g026270.1
I
0.681
mgf026642m
Mimulus guttatus
mgf026642m
I
0.681
CBF2
Arabidopsis lyrata
fgenesh2_kg.7__1712__AT4G25470.1
I
0.681
Solyc03g026280.2
Solanum lycopersicum
Solyc03g026280.2
I
0.680
PGSC0003DMG400014309
Solanum tuberosum
PGSC0003DMG400014309
I
0.678
Cla002362
Citrullus lanatus
Cla002362
I
0.678
POPTR_0015s13830
Populus trichocarpa
POPTR_0015s13830
I
0.677