Pavir.Ga01094 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ga01094 T009466_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8LKX0_MAIZE
M09722_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DBF2_01 		0.753 0.880
ERF034
M06614_2.00 		Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN		 Dap-seq
OMalley et al.(2016)
At2g44940_col_a 		0.710 0.840
ERF034
M06615_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a 		0.710 0.840
ERF035
M06631_2.00 		Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR		 Dap-seq
OMalley et al.(2016)
AT3G60490_col_a 		0.695 0.800
ERF035
M06632_2.00 		Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a 		0.695 0.800
Q5MAR7_BRANA
M09742_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII1_01 		0.690 0.840
Q3HS44_BRANA
M09741_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII2_01 		0.690 0.840
Q3HS43_BRANA
M09740_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII3_01 		0.690 0.840
ERF043
M01627_2.00 		Arabidopsis thaliana
YRCCGACA
TGTCGGYR		 PBM
Weirauch et al.(2014)
pTH7413 		0.688 0.800
ERF043
M06651_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a 		0.688 0.800
ERF043
M06652_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_col 		0.688 0.800
ERF037
M00843_2.00 		Arabidopsis thaliana
NRCCGACRN
NYGTCGGYN		 PBM
Franco-Zorrilla et al.(2014)
At1g77200 		0.679 0.840
ERF037
M06599_2.00 		Arabidopsis thaliana
YCRCCGACAHHNNH
DNNDDTGTCGGYGR		 Dap-seq
OMalley et al.(2016)
AT1G77200_col_a 		0.679 0.840
ERF037
M06600_2.00 		Arabidopsis thaliana
NNYACCGACAHN
NDTGTCGGTRNN		 Dap-seq
OMalley et al.(2016)
AT1G77200_colamp_a 		0.679 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ga01094.1.p AP2 61 112

Links

Other AP2 family TFs
Other Panicum virgatum TFs

255 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G028969 Zea mays GRMZM2G028969 I 0.817
GRMZM2G041839 Zea mays GRMZM2G041839 I 0.776
GRMZM2G048621 Zea mays GRMZM2G048621 I 0.776
Sb06g024540 Sorghum bicolor Sb06g024540 I 0.769
Si012688m.g Setaria italica Si012688m.g I 0.769
Pavir.Gb01129 Panicum virgatum Pavir.Gb01129 I 0.763
GRMZM5G806839 Zea mays GRMZM5G806839 I 0.762
Si019772m.g Setaria italica Si019772m.g I 0.761
Pavir.Ab02603 Panicum virgatum Pavir.Ab02603 I 0.761
Pavir.Aa00833 Panicum virgatum Pavir.Aa00833 I 0.761
Sb01g029065 Sorghum bicolor Sb01g029065 I 0.753
Pavir.Ia02208 Panicum virgatum Pavir.Ia02208 I 0.753
GRMZM5G889719 Zea mays GRMZM5G889719 I 0.753
Si039427m.g Setaria italica Si039427m.g I 0.753
Q8LKX0_MAIZE Zea mays Q8LKX0_MAIZE D 0.753
GRMZM5G816314 Zea mays GRMZM5G816314 I 0.750
GRMZM2G072926 Zea mays GRMZM2G072926 I 0.750
Si017865m.g Setaria italica Si017865m.g I 0.750
Sb04g032940 Sorghum bicolor Sb04g032940 I 0.750
BRADI3G33355 Brachypodium distachyon BRADI3G33355 I 0.749
ONIVA06G21640 Oryza nivara ONIVA06G21640 I 0.748
OMERI06G18780 Oryza meridionalis OMERI06G18780 I 0.748
ORUFI06G19350 Oryza rufipogon ORUFI06G19350 I 0.748
BRADI1G38110 Brachypodium distachyon BRADI1G38110 I 0.748
LPERR10G14320 Leersia perrieri LPERR10G14320 I 0.747
MTR_7g046260 Medicago truncatula MTR_7g046260 I 0.747
BRADI5G17620 Brachypodium distachyon BRADI5G17620 I 0.744
OBART04G20820 Oryza barthii OBART04G20820 I 0.741
ONIVA04G19060 Oryza nivara ONIVA04G19060 I 0.741
OS04G0549800 Oryza sativa OS04G0549800 I 0.741
OPUNC04G18520 Oryza punctata OPUNC04G18520 I 0.741
BGIOSGA016883 Oryza indica BGIOSGA016883 I 0.741
ORGLA04G0178700 Oryza glaberrima ORGLA04G0178700 I 0.741
OMERI04G17270 Oryza meridionalis OMERI04G17270 I 0.741
OGLUM04G20760 Oryza glumaepatula OGLUM04G20760 I 0.741
ORUFI04G22410 Oryza rufipogon ORUFI04G22410 I 0.741
GRMZM2G073047 Zea mays GRMZM2G073047 I 0.740
MLOC_17203 Hordeum vulgare MLOC_17203 I 0.739
OB06G25840 Oryza brachyantha OB06G25840 I 0.737
GLYMA01G13410 Glycine max GLYMA01G13410 I 0.737
ONIVA02G10590 Oryza nivara ONIVA02G10590 I 0.736
OGLUM02G09810 Oryza glumaepatula OGLUM02G09810 I 0.736
OMERI02G10950 Oryza meridionalis OMERI02G10950 I 0.736
Si018188m.g Setaria italica Si018188m.g I 0.736
ORGLA02G0087100 Oryza glaberrima ORGLA02G0087100 I 0.736
OPUNC02G08670 Oryza punctata OPUNC02G08670 I 0.736
LPERR06G15020 Leersia perrieri LPERR06G15020 I 0.736
GRMZM2G047918 Zea mays GRMZM2G047918 I 0.736
BRADI3G08790 Brachypodium distachyon BRADI3G08790 I 0.736
Pavir.Ab00844 Panicum virgatum Pavir.Ab00844 I 0.736
ORUFI02G09750 Oryza rufipogon ORUFI02G09750 I 0.736
Traes_2BL_984787AC0 Triticum aestivum Traes_2BL_984787AC0 I 0.735
Traes_2AL_0F08552FB Triticum aestivum Traes_2AL_0F08552FB I 0.735
Cla004187 Citrullus lanatus Cla004187 I 0.735
GRMZM2G005301 Zea mays GRMZM2G005301 I 0.733
F775_11989 Aegilops tauschii F775_11989 I 0.732
ONIVA10G21000 Oryza nivara ONIVA10G21000 I 0.732
OPUNC10G16830 Oryza punctata OPUNC10G16830 I 0.732
OGLUM10G18570 Oryza glumaepatula OGLUM10G18570 I 0.732
Traes_7DL_538583735 Triticum aestivum Traes_7DL_538583735 I 0.732
F775_14820 Aegilops tauschii F775_14820 I 0.732
Traes_1BL_E39CD252E Triticum aestivum Traes_1BL_E39CD252E I 0.732
OMERI08G00520 Oryza meridionalis OMERI08G00520 I 0.732
Si007144m.g Setaria italica Si007144m.g I 0.732
Traes_1AL_88D49649D Triticum aestivum Traes_1AL_88D49649D I 0.732
ORGLA10G0136200 Oryza glaberrima ORGLA10G0136200 I 0.732
mgf019024m Mimulus guttatus mgf019024m I 0.731
OPUNC06G16400 Oryza punctata OPUNC06G16400 I 0.730
GSMUA_Achr9G05860_001 Musa acuminata GSMUA_Achr9G05860_001 I 0.729
GSMUA_Achr2G09430_001 Musa acuminata GSMUA_Achr2G09430_001 I 0.728
orange1.1g041119m.g Citrus sinensis orange1.1g041119m.g I 0.727
Gorai.004G281600 Gossypium raimondii Gorai.004G281600 I 0.727
mgf022802m Mimulus guttatus mgf022802m I 0.727
Ciclev10009138m.g Citrus clementina Ciclev10009138m.g I 0.727
Pavir.Da00839 Panicum virgatum Pavir.Da00839 I 0.726
Cucsa.235510 Cucumis sativus Cucsa.235510 I 0.725
AC187157.4_FG001 Zea mays AC187157.4_FG001 I 0.725
GSMUA_Achr10G14070_001 Musa acuminata GSMUA_Achr10G14070_001 I 0.724
MTR_8g102800 Medicago truncatula MTR_8g102800 I 0.723
GLYMA08G03910 Glycine max GLYMA08G03910 I 0.723
Ca_05941 Cicer arietinum Ca_05941 I 0.723
TRAES3BF073700060CFD_g Triticum aestivum TRAES3BF073700060CFD_g I 0.722
chr4.CM0617.510.nd Lotus japonicus chr4.CM0617.510.nd I 0.722
Cla023465 Citrullus lanatus Cla023465 I 0.722
Gorai.010G075300 Gossypium raimondii Gorai.010G075300 I 0.722
Gorai.001G008100 Gossypium raimondii Gorai.001G008100 I 0.722
Eucgr.C03785 Eucalyptus grandis Eucgr.C03785 I 0.721
gene11882-v1.0-hybrid Fragaria vesca gene11882-v1.0-hybrid I 0.720
GLYMA05G35741 Glycine max GLYMA05G35741 I 0.720
BRADI2G06180 Brachypodium distachyon BRADI2G06180 I 0.719
Cucsa.312570 Cucumis sativus Cucsa.312570 I 0.719
Cucsa.116550 Cucumis sativus Cucsa.116550 I 0.716
Cla017050 Citrullus lanatus Cla017050 I 0.716
Gorai.007G087100 Gossypium raimondii Gorai.007G087100 I 0.716
TCM_005639 Theobroma cacao TCM_005639 I 0.716
ORUFI02G28010 Oryza rufipogon ORUFI02G28010 I 0.714
Pavir.Gb01128 Panicum virgatum Pavir.Gb01128 I 0.714
LPERR02G21590 Leersia perrieri LPERR02G21590 I 0.714
ONIVA04G19090 Oryza nivara ONIVA04G19090 I 0.714
ORUFI04G22430 Oryza rufipogon ORUFI04G22430 I 0.714
OS02G0657000 Oryza sativa OS02G0657000 I 0.714
Traes_6DL_3019F176A Triticum aestivum Traes_6DL_3019F176A I 0.714
Pavir.Ga01093 Panicum virgatum Pavir.Ga01093 I 0.714
ORGLA04G0179000 Oryza glaberrima ORGLA04G0179000 I 0.714
MLOC_3095 Hordeum vulgare MLOC_3095 I 0.714
OMERI02G25910 Oryza meridionalis OMERI02G25910 I 0.714
OPUNC02G24230 Oryza punctata OPUNC02G24230 I 0.714
OMERI04G17290 Oryza meridionalis OMERI04G17290 I 0.714
ONIVA02G28990 Oryza nivara ONIVA02G28990 I 0.714
OS04G0550200 Oryza sativa OS04G0550200 I 0.714
OPUNC04G18530 Oryza punctata OPUNC04G18530 I 0.714
OGLUM02G27070 Oryza glumaepatula OGLUM02G27070 I 0.714
Si012254m.g Setaria italica Si012254m.g I 0.714
BGIOSGA016884 Oryza indica BGIOSGA016884 I 0.714
OGLUM04G20790 Oryza glumaepatula OGLUM04G20790 I 0.714
Sb03g002630 Sorghum bicolor Sb03g002630 I 0.713
BGIOSGA002184 Oryza indica BGIOSGA002184 I 0.713
Pavir.Eb00249 Panicum virgatum Pavir.Eb00249 I 0.713
ONIVA01G08000 Oryza nivara ONIVA01G08000 I 0.713
Si002749m.g Setaria italica Si002749m.g I 0.713
ORUFI10G19670 Oryza rufipogon ORUFI10G19670 I 0.712
30174.m008790 Ricinus communis 30174.m008790 I 0.711
VIT_09s0002g03940 Vitis vinifera VIT_09s0002g03940 I 0.711
Pm017610 Prunus mume Pm017610 I 0.710
OGLUM01G07430 Oryza glumaepatula OGLUM01G07430 I 0.710
SapurV1A.0033s0230 Salix purpurea SapurV1A.0033s0230 I 0.710
OBART01G06440 Oryza barthii OBART01G06440 I 0.710
PRUPE_ppa009812mg Prunus persica PRUPE_ppa009812mg I 0.710
Bostr.25993s0277 Boechera stricta Bostr.25993s0277 I 0.710
fgenesh2_kg.4__2683__AT2G44940.1 Arabidopsis lyrata fgenesh2_kg.4__2683__AT2G44940.1 I 0.710
Cagra.0239s0048 Capsella grandiflora Cagra.0239s0048 I 0.710
Carubv10023699m.g Capsella rubella Carubv10023699m.g I 0.710
Thhalv10001792m.g Eutrema salsugineum Thhalv10001792m.g I 0.710
OS01G0200600 Oryza sativa OS01G0200600 I 0.710
ERF034 Arabidopsis thaliana AT2G44940 D 0.710
OMERI01G06530 Oryza meridionalis OMERI01G06530 I 0.710
ORUFI01G06970 Oryza rufipogon ORUFI01G06970 I 0.710
OPUNC01G06210 Oryza punctata OPUNC01G06210 I 0.710
ORGLA01G0061000 Oryza glaberrima ORGLA01G0061000 I 0.710
POPTR_0002s14210 Populus trichocarpa POPTR_0002s14210 I 0.709
TCM_014892 Theobroma cacao TCM_014892 I 0.709
Pavir.Aa00832 Panicum virgatum Pavir.Aa00832 I 0.709
LPERR04G16900 Leersia perrieri LPERR04G16900 I 0.708
OBART02G09680 Oryza barthii OBART02G09680 I 0.708
GRMZM2G172936 Zea mays GRMZM2G172936 I 0.708
OB04G27840 Oryza brachyantha OB04G27840 I 0.707
Pavir.Aa00834 Panicum virgatum Pavir.Aa00834 I 0.707
cassava17387.m1 Manihot esculenta cassava17387.m1 I 0.707
BRADI3G50630 Brachypodium distachyon BRADI3G50630 I 0.707
Cucsa.121080 Cucumis sativus Cucsa.121080 I 0.706
Gorai.004G165300 Gossypium raimondii Gorai.004G165300 I 0.706
Sb04g032960 Sorghum bicolor Sb04g032960 I 0.706
Si017995m.g Setaria italica Si017995m.g I 0.706
GRMZM5G842961 Zea mays GRMZM5G842961 I 0.706
Bo4g195280 Brassica oleracea Bo4g195280 I 0.704
Bra040333 Brassica rapa Bra040333 I 0.704
Bra004878 Brassica rapa Bra004878 I 0.704
Bo4g024220 Brassica oleracea Bo4g024220 I 0.704
Pavir.Ab02601 Panicum virgatum Pavir.Ab02601 I 0.702
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.702
PGSC0003DMG400000365 Solanum tuberosum PGSC0003DMG400000365 I 0.700
cassava19875.m1 Manihot esculenta cassava19875.m1 I 0.700
cassava19912.m1 Manihot esculenta cassava19912.m1 I 0.700
GSMUA_Achr6G26280_001 Musa acuminata GSMUA_Achr6G26280_001 I 0.700
Solyc12g008350.1 Solanum lycopersicum Solyc12g008350.1 I 0.700
GSMUA_Achr1G04350_001 Musa acuminata GSMUA_Achr1G04350_001 I 0.698
Traes_2DL_A336122501 Triticum aestivum Traes_2DL_A336122501 I 0.697
Traes_2AL_43491B9E0 Triticum aestivum Traes_2AL_43491B9E0 I 0.697
Traes_2BL_FC0F8A3DC Triticum aestivum Traes_2BL_FC0F8A3DC I 0.697
F775_04501 Aegilops tauschii F775_04501 I 0.697
gene04810-v1.0-hybrid Fragaria vesca gene04810-v1.0-hybrid I 0.697
PK01156.1 Cannabis sativa PK01156.1 I 0.696
28353.m000054 Ricinus communis 28353.m000054 I 0.696
fgenesh2_kg.5__2513__AT3G60490.1 Arabidopsis lyrata fgenesh2_kg.5__2513__AT3G60490.1 I 0.695
ERF035 Arabidopsis thaliana AT3G60490 D 0.695
Cagra.3527s0003 Capsella grandiflora Cagra.3527s0003 I 0.694
Carubv10017799m.g Capsella rubella Carubv10017799m.g I 0.694
PGSC0003DMG400002620 Solanum tuberosum PGSC0003DMG400002620 I 0.694
Pm013463 Prunus mume Pm013463 I 0.693
cassava15622.m1 Manihot esculenta cassava15622.m1 I 0.693
TCM_044478 Theobroma cacao TCM_044478 I 0.693
Bo1g009990 Brassica oleracea Bo1g009990 I 0.692
Bra011383 Brassica rapa Bra011383 I 0.692
Bo3g037480 Brassica oleracea Bo3g037480 I 0.691
Bra000366 Brassica rapa Bra000366 I 0.691
Solyc03g120840.1 Solanum lycopersicum Solyc03g120840.1 I 0.691
Bostr.13158s0050 Boechera stricta Bostr.13158s0050 I 0.691
Eucgr.F03062 Eucalyptus grandis Eucgr.F03062 I 0.691
Si018222m.g Setaria italica Si018222m.g I 0.691
Q5MAR7_BRANA Brassica napus Q5MAR7_BRANA D 0.690
ATERF38 Arabidopsis lyrata fgenesh2_kg.4__1597__AT2G35700.1 I 0.690
Q3HS44_BRANA Brassica napus Q3HS44_BRANA D 0.690
Gorai.009G136500 Gossypium raimondii Gorai.009G136500 I 0.690
Carubv10024111m.g Capsella rubella Carubv10024111m.g I 0.690
Q3HS43_BRANA Brassica napus Q3HS43_BRANA D 0.690
Cagra.0993s0081 Capsella grandiflora Cagra.0993s0081 I 0.690
Bra005314 Brassica rapa Bra005314 I 0.690
Thhalv10017258m.g Eutrema salsugineum Thhalv10017258m.g I 0.690
Bo4g036220 Brassica oleracea Bo4g036220 I 0.690
30146.m003535 Ricinus communis 30146.m003535 I 0.689
Gorai.009G050200 Gossypium raimondii Gorai.009G050200 I 0.689
evm.TU.supercontig_101.39 Carica papaya evm.TU.supercontig_101.39 I 0.688
Bra034535 Brassica rapa Bra034535 I 0.688
Bo7g115860 Brassica oleracea Bo7g115860 I 0.688
Bra037041 Brassica rapa Bra037041 I 0.688
Bostr.7867s1130 Boechera stricta Bostr.7867s1130 I 0.688
Cagra.4093s0009 Capsella grandiflora Cagra.4093s0009 I 0.688
mgf022971m Mimulus guttatus mgf022971m I 0.688
scaffold_700899.1 Arabidopsis lyrata scaffold_700899.1 I 0.688
Carubv10006567m.g Capsella rubella Carubv10006567m.g I 0.688
Thhalv10026204m.g Eutrema salsugineum Thhalv10026204m.g I 0.688
ERF043 Arabidopsis thaliana AT4G32800 D 0.688
Bo3g171090 Brassica oleracea Bo3g171090 I 0.688
evm.TU.supercontig_40.39 Carica papaya evm.TU.supercontig_40.39 I 0.687
PRUPE_ppa011735mg Prunus persica PRUPE_ppa011735mg I 0.687
TCM_028851 Theobroma cacao TCM_028851 I 0.687
Bostr.23794s0528 Boechera stricta Bostr.23794s0528 I 0.686
Solyc06g066540.1 Solanum lycopersicum Solyc06g066540.1 I 0.685
orange1.1g023148m.g Citrus sinensis orange1.1g023148m.g I 0.685
OB01G16440 Oryza brachyantha OB01G16440 I 0.685
Ciclev10024602m.g Citrus clementina Ciclev10024602m.g I 0.685
Gorai.007G028800 Gossypium raimondii Gorai.007G028800 I 0.685
mgf024816m Mimulus guttatus mgf024816m I 0.685
Gorai.001G176500 Gossypium raimondii Gorai.001G176500 I 0.685
BRADI5G17640 Brachypodium distachyon BRADI5G17640 I 0.685
chr1.CM0171.140.nc Lotus japonicus chr1.CM0171.140.nc I 0.684
Ciclev10027587m.g Citrus clementina Ciclev10027587m.g I 0.684
Lus10001601.g Linum usitatissimum Lus10001601.g I 0.684
Lus10002801.g Linum usitatissimum Lus10002801.g I 0.684
orange1.1g038538m.g Citrus sinensis orange1.1g038538m.g I 0.684
Ciclev10021740m.g Citrus clementina Ciclev10021740m.g I 0.683
orange1.1g024791m.g Citrus sinensis orange1.1g024791m.g I 0.683
Ca_12765 Cicer arietinum Ca_12765 I 0.682
Bra015686 Brassica rapa Bra015686 I 0.682
VIT_11s0016g03350 Vitis vinifera VIT_11s0016g03350 I 0.681
MTR_5g012910 Medicago truncatula MTR_5g012910 I 0.681
TCM_015930 Theobroma cacao TCM_015930 I 0.681
Gorai.003G063500 Gossypium raimondii Gorai.003G063500 I 0.681
chr1.CM0206.1000.nd Lotus japonicus chr1.CM0206.1000.nd I 0.680
Thhalv10019064m.g Eutrema salsugineum Thhalv10019064m.g I 0.679
Bostr.20129s0154 Boechera stricta Bostr.20129s0154 I 0.679
Bo6g121150 Brassica oleracea Bo6g121150 I 0.679
Bo6g083410 Brassica oleracea Bo6g083410 I 0.679
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.679
fgenesh2_kg.2__2014__AT1G77200.1 Arabidopsis lyrata fgenesh2_kg.2__2014__AT1G77200.1 I 0.679
Carubv10022336m.g Capsella rubella Carubv10022336m.g I 0.679
ERF037 Arabidopsis thaliana AT1G77200 D 0.679
MDP0000652413 Malus domestica MDP0000652413 I 0.678
LjSGA_095655.1 Lotus japonicus LjSGA_095655.1 I 0.677
Ciclev10006536m.g Citrus clementina Ciclev10006536m.g I 0.677
orange1.1g041015m.g Citrus sinensis orange1.1g041015m.g I 0.677
SapurV1A.0540s0020 Salix purpurea SapurV1A.0540s0020 I 0.677
Carubv10005867m.g Capsella rubella Carubv10005867m.g I 0.677
Bostr.30275s0134 Boechera stricta Bostr.30275s0134 I 0.677
GSMUA_AchrUn_randomG24010_001 Musa acuminata GSMUA_AchrUn_randomG24010_001 I 0.677