CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ha00304
(
Panicum virgatum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Pavir.Ha00304
T009487_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF094
M01602_2.00
Arabidopsis thaliana
VGCCGCCD
HGGCGGCB
PBM
Weirauch et al.(2014)
pTH8276
0.743
0.784
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ha00304.1.p
AP2
33
84
AFIGVRPRPWGTFAAEIRDSTRRGARVWLGTFDTPEAAALAYDQAAFSTRGA
Links
Other
AP2
family TFs
Other
Panicum virgatum
TFs
198 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy